CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21764	Soybean	nucleus	86.06	86.89
VIT_03s0017g00360.t01	Wine grape	nucleus	24.52	80.95
VIT_03s0167g00100.t01	Wine grape	nucleus	23.56	80.33
VIT_00s0729g00010.t01	Wine grape	nucleus	23.56	79.03
VIT_15s0024g01860.t01	Wine grape	nucleus	23.56	75.38
KRH62216	Soybean	nucleus	23.56	74.24
VIT_03s0017g00440.t01	Wine grape	nucleus	30.77	68.09
VIT_03s0017g00450.t01	Wine grape	nucleus	24.04	66.67
KRH42097	Soybean	nucleus	63.46	64.39
KRH49819	Soybean	nucleus	63.46	64.08
VIT_15s0024g02000.t01	Wine grape	nucleus	24.04	58.14
Zm00001d044899_P001	Maize	nucleus	18.27	53.52
VIT_15s0107g00120.t01	Wine grape	nucleus	42.31	48.89
PGSC0003DMT400083739	Potato	nucleus	50.0	47.06
KRH10606	Soybean	nucleus	47.6	46.92
KRH74496	Soybean	nucleus	50.0	45.81
KRH69674	Soybean	nucleus	49.04	44.93
GSMUA_Achr10P...	Banana	nucleus	46.15	42.11
KRH52935	Soybean	nucleus	46.63	41.45
GSMUA_Achr3P06800_001	Banana	nucleus	44.23	40.17
KRH21757	Soybean	nucleus	47.6	39.92
Zm00001d018142_P001	Maize	nucleus	42.31	39.82
Zm00001d052180_P001	Maize	nucleus	41.35	38.91
TraesCS6A01G313800.1	Wheat	nucleus	42.31	38.6
TraesCS6B01G343900.1	Wheat	cytosol	42.31	38.6
TraesCS6D01G293200.1	Wheat	nucleus	42.31	38.6
KXG31156	Sorghum	nucleus	41.83	38.16
Os02t0761000-01	Rice	nucleus	41.83	38.16
TraesCS4D01G301100.1	Wheat	nucleus	41.35	38.05
HORVU6Hr1G077300.8	Barley	nucleus	41.83	37.83
Os06t0217300-01	Rice	nucleus	40.38	37.67
Solyc01g105800.2.1	Tomato	nucleus	50.48	37.63
HORVU4Hr1G077850.13	Barley	nucleus	42.31	37.61
TraesCS4B01G302600.2	Wheat	nucleus	40.87	37.28
KXG40019	Sorghum	nucleus	41.35	37.07
Os03t0186600-01	Rice	nucleus	42.31	35.48
TraesCS7D01G176700.1	Wheat	nucleus	38.46	35.4
EER88077	Sorghum	nucleus	37.98	35.11
Zm00001d027957_P001	Maize	nucleus	42.31	34.78
TraesCS7A01G175200.2	Wheat	nucleus	37.98	32.92
TraesCS7B01G080300.2	Wheat	cytosol	37.98	32.78
TraesCS4A01G002600.1	Wheat	nucleus	25.48	32.52
VIT_03s0167g00070.t01	Wine grape	nucleus	27.4	31.15
GSMUA_Achr9P15180_001	Banana	nucleus	43.75	30.95
Zm00001d027955_P001	Maize	extracellular, golgi	22.12	25.56
HORVU7Hr1G036130.10	Barley	nucleus, plastid	23.08	20.0

Protein Annotations

EntrezGene:100779453	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02009149	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G057900
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:K7M9U5
ProteinID:KRH10602.1	EnsemblPlants:KRH10603	ProteinID:KRH10603	ProteinID:KRH10603.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0001E23E15	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4472953..4479976

Molecular Weight (calculated)

23845.5 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.775

Length

208 amino acids

Sequence
(BLAST)

001: MTRKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFSA TGKLFEYASS SMQQTLERRN QHSGIQGLDN PSIGQQLGSD SFGMLPLRKE
101: IEDKTNELSQ LNEEELQGLK IKELQKLEDI LQRRWTTISK TKDEKVIQEI NHLKTKEAKL MEENQKLKQS FLQEQRQSYE SFTCSSSEFP PDNGSSDTSL
201: KLGLSLFE

Best Arabidopsis Sequence Match ( AT2G22540.1 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.