CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88077
EES01980
KXG25532
KXG31156
KXG39016
KXG40019
OQU86329
OQU93352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	EES01980	AT2G45660.1	20129060
AT2G18040.1	KXG25532	AT2G45660.1	20129060
AT2G18040.1	KXG39016	AT2G45660.1	20129060
AT2G18040.1	OQU86329	AT2G45660.1	20129060
AT2G18040.1	OQU93352	AT2G45660.1	20129060
AT2G18040.1	EER88077	AT4G24540.1	20129060
AT2G18040.1	KXG31156	AT4G24540.1	20129060
AT2G18040.1	KXG40019	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G072290.1	Barley	cytosol	17.34	44.33
HORVU6Hr1G068220.3	Barley	cytosol	15.73	44.32
EES11766	Sorghum	nucleus	21.77	43.55
TraesCS2D01G009700.1	Wheat	cytosol	20.16	41.32
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	20.16	41.32
HORVU5Hr1G121760.1	Barley	cytosol	9.27	41.07
HORVU2Hr1G001350.2	Barley	nucleus	20.16	40.98
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	20.16	40.65
GSMUA_Achr11P...	Banana	nucleus	17.74	37.29
GSMUA_Achr8P19300_001	Banana	cytosol	17.74	37.29
Bra024480.1-P	Field mustard	mitochondrion	16.94	35.29
HORVU3Hr1G096490.2	Barley	cytosol	19.76	35.0
Solyc01g110530.2.1	Tomato	plastid	16.53	34.75
PGSC0003DMT400004094	Potato	nucleus	16.53	34.75
CDY20906	Canola	mitochondrion	16.53	34.45
CDY25130	Canola	cytosol, mitochondrion, nucleus	16.53	34.45
CDY29218	Canola	mitochondrion	16.53	34.45
CDY38175	Canola	cytosol, mitochondrion, nucleus	16.53	34.45
Bra039913.1-P	Field mustard	cytosol, mitochondrion, nucleus	16.53	34.45
KRH69799	Soybean	cytosol	17.34	34.13
KRH08096	Soybean	cytosol	16.94	33.33
AT2G18040.1	Thale cress	mitochondrion	15.73	32.77
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	12.9	32.32
VIT_04s0023g03190.t01	Wine grape	cytosol	14.92	31.36
Solyc02g062250.2.1	Tomato	nucleus	14.92	29.13
PGSC0003DMT400051327	Potato	nucleus	14.92	29.13
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	12.5	28.97
OQU82515	Sorghum	nucleus	21.77	26.09
TraesCS5B01G513900.1	Wheat	nucleus	14.92	25.52
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	17.34	23.63
CDX87855	Canola	nucleus	18.15	12.03

Protein Annotations

EnsemblPlants:OQU79160	EnsemblPlantsGene:SORBI_3008G102532	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR000297	InterPro:PPIase_PpiC	PFscan:PS50198	ProteinID:OQU79160	ProteinID:OQU79160.1
SEG:seg	SUPFAM:SSF54534	UniParc:UPI000B8BAE62	UniProt:A0A1Z5R613	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:+:48633721..48636774

Molecular Weight (calculated)

25098.1 Da

IEP (calculated)

6.674

GRAVY (calculated)

-0.313

Length

248 amino acids

Sequence
(BLAST)

001: MGAALVRPAL YYQAPNAGSD GTAAEAEDSS VSGASIAAEA AAPATPLNSS AAASVLNDDA GGAAAEVASP TALPSSGKSN TTSGAGEAGA PTPLHTSEPE
101: ASTLNVVVAG GDDDDAKAAA PILNNSFAPA VPSTMYLPPE LPGVLPPIDR FQPRRPHPLP TPRRRSLCPR APTLIKHKGS RHKASWKDPD GRIISATTRA
201: DVAILSGEAN FADLTARHSD CSSARRGGDL AFSLLSCARR DRSGGYNG

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.