Factsheet for Solyc02g062250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051327	Potato	nucleus	99.21	99.21
GSMUA_Achr8P19300_001	Banana	cytosol	69.29	74.58
GSMUA_Achr11P...	Banana	nucleus	67.72	72.88
Solyc01g110530.2.1	Tomato	plastid	66.14	71.19
Os04t0663800-01	Rice	cytosol, nucleus	38.58	68.06
HORVU2Hr1G001350.2	Barley	nucleus	65.35	68.03
TraesCS2D01G009700.1	Wheat	cytosol	63.78	66.94
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	63.78	66.94
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	64.57	66.13
EES11766	Sorghum	nucleus	64.57	66.13
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	63.78	65.85
HORVU2Hr1G109660.3	Barley	cytosol	23.62	65.22
Os04t0118500-01	Rice	plastid	62.2	64.23
TraesCS2D01G491300.1	Wheat	mitochondrion	52.76	59.29
HORVU5Hr1G121760.1	Barley	cytosol	22.83	51.79
HORVU6Hr1G068220.3	Barley	cytosol	31.5	45.45
HORVU4Hr1G072290.1	Barley	cytosol	33.07	43.3
OQU82515	Sorghum	nucleus	62.99	38.65
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	26.77	34.34
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	28.35	33.64
HORVU3Hr1G096490.2	Barley	cytosol	33.07	30.0
TraesCS5B01G513900.1	Wheat	nucleus	27.56	24.14
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	25.98	18.13
OQU79160	Sorghum	cytosol, nucleus, plastid	29.13	14.92

Protein Annotations

MapMan:18.12.4	Gene3D:3.10.50.40	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005829	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0032880	InterPro:IPR000297	UniProt:K4B6B4	PFAM:PF00639	InterPro:PPIase_PpiC	PFscan:PS50198
PANTHER:PTHR10657	PANTHER:PTHR10657:SF4	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc02g062250.2	EnsemblPlants:Solyc02g062250.2.1	UniParc:UPI0001765025

Description

Peptidyl-prolyl cis-trans isomerase Pin1 [Source:Projected from Arabidopsis thaliana (AT2G18040) UniProtKB/Swiss-Prot;Acc:Q9SL42]

Coordinates

chr2:+:33856495..33862127

Molecular Weight (calculated)

13758.3 Da

IEP (calculated)

10.171

GRAVY (calculated)

-0.534

Length

127 amino acids

Sequence
(BLAST)

001: MPSSSSRYGA GGDKVKASHI LIKHQESRRK FSWKDPEGRV ISNTTKEAAV SQLKSIREDI VSGKAKFQDI AATHSHCSSA KRGGDLGSFG KGQMQKPFEE
101: ATFALKVGEI SDIVETESGV HIILRTA

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.