Factsheet for PGSC0003DMT400051327

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062250.2.1	Tomato	nucleus	99.21	99.21
GSMUA_Achr8P19300_001	Banana	cytosol	69.29	74.58
GSMUA_Achr11P...	Banana	nucleus	67.72	72.88
PGSC0003DMT400004094	Potato	nucleus	67.72	72.88
HORVU2Hr1G001350.2	Barley	nucleus	66.14	68.85
Os04t0663800-01	Rice	cytosol, nucleus	38.58	68.06
TraesCS2D01G009700.1	Wheat	cytosol	63.78	66.94
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	63.78	66.94
Zm00001d025062_P001	Maize	extracellular, mitochondrion, plastid	64.57	66.13
EES11766	Sorghum	nucleus	64.57	66.13
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	63.78	65.85
HORVU2Hr1G109660.3	Barley	cytosol	23.62	65.22
Os04t0118500-01	Rice	plastid	62.99	65.04
TraesCS2D01G491300.1	Wheat	mitochondrion	52.76	59.29
HORVU5Hr1G121760.1	Barley	cytosol	23.62	53.57
HORVU6Hr1G068220.3	Barley	cytosol	32.28	46.59
HORVU4Hr1G072290.1	Barley	cytosol	33.86	44.33
OQU82515	Sorghum	nucleus	62.99	38.65
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	26.77	34.34
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	28.35	33.64
HORVU3Hr1G096490.2	Barley	cytosol	33.86	30.71
TraesCS5B01G513900.1	Wheat	nucleus	27.56	24.14
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	25.98	18.13
OQU79160	Sorghum	cytosol, nucleus, plastid	29.13	14.92

Protein Annotations

EntrezGene:102579091	MapMan:18.12.4	Gene3D:3.10.50.40	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005829	GO:GO:0005886	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853
GO:GO:0019538	GO:GO:0032880	InterPro:IPR000297	UniProt:M1BRK7	PFAM:PF00639	EnsemblPlantsGene:PGSC0003DMG400019933
PGSC:PGSC0003DMG400019933	EnsemblPlants:PGSC0003DMT400051327	InterPro:PPIase_PpiC	PFscan:PS50198	PANTHER:PTHR10657	PANTHER:PTHR10657:SF4
SUPFAM:SSF54534	UniParc:UPI0002954F9F	RefSeq:XP_006366567.1	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase Pin1 [Source:PGSC_GENE;Acc:PGSC0003DMG400019933]

Coordinates

chr2:+:20485293..20490826

Molecular Weight (calculated)

13682.2 Da

IEP (calculated)

10.276

GRAVY (calculated)

-0.530

Length

127 amino acids

Sequence
(BLAST)

001: MPSSSSRSGA GGDKVKASHI LIKHQESRRK FSWKDPEGRV ISNTTKEAAV SQLKSIREDI VSGKAKFQDI AATHSHCSSA KRGGDLGSFG KGQMQKPFEE
101: ATFALKVGEI SDIVETESGV HIILRTA

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.