Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G109660.3 | Barley | cytosol | 47.22 | 73.91 |
| TraesCS2D01G491300.1 | Wheat | mitochondrion | 75.0 | 47.79 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 73.61 | 44.92 |
| CDY20906 | Canola | mitochondrion | 73.61 | 44.54 |
| CDY29218 | Canola | mitochondrion | 73.61 | 44.54 |
| Bra024480.1-P | Field mustard | mitochondrion | 72.22 | 43.7 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 72.22 | 43.7 |
| AT2G18040.1 | Thale cress | mitochondrion | 72.22 | 43.7 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 70.83 | 42.86 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 70.83 | 42.86 |
| Solyc01g110530.2.1 | Tomato | plastid | 69.44 | 42.37 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 69.44 | 42.37 |
| PGSC0003DMT400004094 | Potato | nucleus | 68.06 | 41.53 |
| KRH08096 | Soybean | cytosol | 72.22 | 41.27 |
| GSMUA_Achr11P... | Banana | nucleus | 66.67 | 40.68 |
| KRH69799 | Soybean | cytosol | 70.83 | 40.48 |
| Os04t0118500-01 | Rice | plastid | 66.67 | 39.02 |
| PGSC0003DMT400051327 | Potato | nucleus | 68.06 | 38.58 |
| Solyc02g062250.2.1 | Tomato | nucleus | 68.06 | 38.58 |
| OQU82515 | Sorghum | nucleus | 79.17 | 27.54 |
| CDX87855 | Canola | nucleus | 72.22 | 13.9 |
Protein Annotations
| MapMan:18.12.4 | Gene3D:3.10.50.40 | ProteinID:BAF16081.1 | ProteinID:BAS91484.1 | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR000297 | EnsemblPlantsGene:Os04g0663800 | EnsemblPlants:Os04t0663800-01 | PFAM:PF00639 |
| InterPro:PPIase_PpiC | InterPro:PPIase_PpiC_CS | ScanProsite:PS01096 | PFscan:PS50198 | PANTHER:PTHR10657 | UniProt:Q0J9A6 |
| SUPFAM:SSF54534 | UniParc:UPI0000DD9318 | : | : | : | : |
Description
Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At). (Os04t0663800-01)
Coordinates
chr4:-:33873137..33875586
Molecular Weight (calculated)
7833.3 Da
IEP (calculated)
5.132
GRAVY (calculated)
-0.374
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: LREKIVAGER KFEDVATEES DCNSAKRGGD LGPFERGKMQ KAFEKAVLAL KVGEISDVVD TDSGVHIILR TA
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.