Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g07460.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18040.1 | VIT_18s0001g07460.t01 | AT4G24540.1 | 20129060 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004094 | Potato | nucleus | 79.66 | 79.66 |
| Solyc01g110530.2.1 | Tomato | plastid | 78.81 | 78.81 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 77.12 | 76.47 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 77.12 | 76.47 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 76.27 | 75.63 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 75.42 | 75.42 |
| Bra024480.1-P | Field mustard | mitochondrion | 75.42 | 74.79 |
| CDY20906 | Canola | mitochondrion | 75.42 | 74.79 |
| CDY29218 | Canola | mitochondrion | 75.42 | 74.79 |
| AT2G18040.1 | Thale cress | mitochondrion | 75.42 | 74.79 |
| GSMUA_Achr11P... | Banana | nucleus | 74.58 | 74.58 |
| KRH08096 | Soybean | cytosol | 77.97 | 73.02 |
| KRH69799 | Soybean | cytosol | 77.12 | 72.22 |
| Os04t0663800-01 | Rice | cytosol, nucleus | 42.37 | 69.44 |
| TraesCS2D01G009700.1 | Wheat | cytosol | 66.95 | 65.29 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 66.95 | 65.29 |
| HORVU2Hr1G001350.2 | Barley | nucleus | 66.95 | 64.75 |
| TraesCS2D01G491300.1 | Wheat | mitochondrion | 61.02 | 63.72 |
| TraesCS2B01G012800.1 | Wheat | cytosol, mitochondrion, nucleus | 66.1 | 63.41 |
| HORVU2Hr1G109660.3 | Barley | cytosol | 24.58 | 63.04 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 66.1 | 62.9 |
| Os04t0118500-01 | Rice | plastid | 65.25 | 62.6 |
| EES11766 | Sorghum | nucleus | 65.25 | 62.1 |
| HORVU5Hr1G121760.1 | Barley | cytosol | 21.19 | 44.64 |
| HORVU4Hr1G072290.1 | Barley | cytosol | 33.9 | 41.24 |
| HORVU6Hr1G068220.3 | Barley | cytosol | 30.51 | 40.91 |
| OQU82515 | Sorghum | nucleus | 68.64 | 39.13 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 27.97 | 33.33 |
| TraesCS4A01G388100.2 | Wheat | cytosol, mitochondrion, nucleus | 28.81 | 31.78 |
| HORVU3Hr1G096490.2 | Barley | cytosol | 33.9 | 28.57 |
| TraesCS5B01G513900.1 | Wheat | nucleus | 30.51 | 24.83 |
| CDX87855 | Canola | nucleus | 76.27 | 24.06 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 27.97 | 18.13 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 31.36 | 14.92 |
Protein Annotations
| EntrezGene:100242075 | wikigene:100242075 | MapMan:18.12.4 | Gene3D:3.10.50.40 | ProteinID:CBI17392 | ProteinID:CBI17392.3 |
| UniProt:D7SP13 | EMBL:FN594959 | GO:GO:0000003 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016853 | GO:GO:0019538 |
| GO:GO:0032880 | InterPro:IPR000297 | EntrezGene:LOC100242075 | wikigene:LOC100242075 | PFAM:PF00639 | InterPro:PPIase_PpiC |
| InterPro:PPIase_PpiC_CS | ScanProsite:PS01096 | PFscan:PS50198 | PANTHER:PTHR10657 | PANTHER:PTHR10657:SF4 | SUPFAM:SSF54534 |
| TIGR:TC52899 | UniParc:UPI00015CB557 | ArrayExpress:VIT_04s0023g03190 | EnsemblPlantsGene:VIT_04s0023g03190 | EnsemblPlants:VIT_04s0023g03190.t01 | RefSeq:XP_002269631 |
| RefSeq:XP_002269631.1 | : | : | : | : | : |
Description
Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7SP13]
Coordinates
chr4:-:19742660..19746023
Molecular Weight (calculated)
12904.3 Da
IEP (calculated)
10.063
GRAVY (calculated)
-0.557
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNQVRASH ILIKHQDSRR KASWRDPEGR VIKATTKESA VTQIKAIRDD IISGKSKFSD VASQISDCSS AKRGGDLGPF GRGQMQKPFE EATYALKVGE
101: ISDIVETDSG VHIIMRTG
101: ISDIVETDSG VHIIMRTG
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.