Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18040.1 | KRH00625 | AT2G45660.1 | 20129060 |
| AT2G18040.1 | KRH40554 | AT2G45660.1 | 20129060 |
| AT2G18040.1 | KRH65189 | AT2G45660.1 | 20129060 |
| AT2G18040.1 | KRH52935 | AT4G24540.1 | 20129060 |
| AT2G18040.1 | KRH62216 | AT4G24540.1 | 20129060 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69799 | Soybean | cytosol | 95.24 | 95.24 |
| Solyc01g110530.2.1 | Tomato | plastid | 74.6 | 79.66 |
| PGSC0003DMT400004094 | Potato | nucleus | 74.6 | 79.66 |
| AT2G18040.1 | Thale cress | mitochondrion | 74.6 | 78.99 |
| CDY29218 | Canola | mitochondrion | 74.6 | 78.99 |
| Bra024480.1-P | Field mustard | mitochondrion | 73.81 | 78.15 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 73.81 | 78.15 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 73.81 | 78.15 |
| CDY20906 | Canola | mitochondrion | 73.81 | 78.15 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 73.02 | 77.97 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 73.02 | 77.97 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 73.02 | 77.31 |
| GSMUA_Achr11P... | Banana | nucleus | 71.43 | 76.27 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 71.43 | 72.58 |
| Os04t0663800-01 | Rice | cytosol, nucleus | 41.27 | 72.22 |
| EES11766 | Sorghum | nucleus | 69.84 | 70.97 |
| Os04t0118500-01 | Rice | plastid | 68.25 | 69.92 |
| HORVU2Hr1G001350.2 | Barley | nucleus | 67.46 | 69.67 |
| TraesCS2D01G009700.1 | Wheat | cytosol | 66.67 | 69.42 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 66.67 | 69.42 |
| TraesCS2B01G012800.1 | Wheat | cytosol, mitochondrion, nucleus | 67.46 | 69.11 |
| TraesCS2D01G491300.1 | Wheat | mitochondrion | 58.73 | 65.49 |
| HORVU2Hr1G109660.3 | Barley | cytosol | 23.81 | 65.22 |
| HORVU5Hr1G121760.1 | Barley | cytosol | 23.81 | 53.57 |
| HORVU6Hr1G068220.3 | Barley | cytosol | 34.13 | 48.86 |
| HORVU4Hr1G072290.1 | Barley | cytosol | 36.51 | 47.42 |
| OQU82515 | Sorghum | nucleus | 68.25 | 41.55 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 28.57 | 36.36 |
| TraesCS4A01G388100.2 | Wheat | cytosol, mitochondrion, nucleus | 29.37 | 34.58 |
| HORVU3Hr1G096490.2 | Barley | cytosol | 36.51 | 32.86 |
| CDX87855 | Canola | nucleus | 76.98 | 25.94 |
| TraesCS5B01G513900.1 | Wheat | nucleus | 27.78 | 24.14 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 26.19 | 18.13 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 33.33 | 16.94 |
Protein Annotations
| MapMan:18.12.4 | Gene3D:3.10.50.40 | EMBL:ACUP02010138 | EnsemblPlantsGene:GLYMA_16G129900 | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | UniProt:I1MN74 | InterPro:IPR000297 | EnsemblPlants:KRH08096 | ProteinID:KRH08096 |
| ProteinID:KRH08096.1 | PFAM:PF00639 | InterPro:PPIase_PpiC | PFscan:PS50198 | PANTHER:PTHR10657 | PANTHER:PTHR10657:SF4 |
| SUPFAM:SSF54534 | UniParc:UPI000233B905 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:28289117..28291591
Molecular Weight (calculated)
13593.1 Da
IEP (calculated)
10.317
GRAVY (calculated)
-0.587
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSKGGG GIEVRASHIL IKHEGSRRKA SWKDPEGRII KSTTRENAVS QLKALRDDIV SGKASFEDIA SRFSDCSSAK RGGDLGPFGR GQMQKPFEEA
101: TFALKVGEIS DIVDTDSGVH IIKRTK
101: TFALKVGEIS DIVDTDSGVH IIKRTK
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.