Factsheet for Zm00001d025062_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

extracellular: 20408568
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018142_P001
Zm00001d027425_P001
Zm00001d027955_P001
Zm00001d027957_P001
Zm00001d031625_P001
Zm00001d039913_P002
Zm00001d042315_P001
Zm00001d044899_P001
Zm00001d047355_P001
Zm00001d047356_P002
Zm00001d048474_P001
Zm00001d052180_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18040.1	Zm00001d027425_P001	AT2G45660.1	20129060
AT2G18040.1	Zm00001d031625_P001	AT2G45660.1	20129060
AT2G18040.1	Zm00001d039913_P002	AT2G45660.1	20129060
AT2G18040.1	Zm00001d042315_P001	AT2G45660.1	20129060
AT2G18040.1	Zm00001d047355_P001	AT2G45660.1	20129060
AT2G18040.1	Zm00001d047356_P002	AT2G45660.1	20129060
AT2G18040.1	Zm00001d048474_P001	AT2G45660.1	20129060
AT2G18040.1	Zm00001d018142_P001	AT4G24540.1	20129060
AT2G18040.1	Zm00001d027955_P001	AT4G24540.1	20129060
AT2G18040.1	Zm00001d027957_P001	AT4G24540.1	20129060
AT2G18040.1	Zm00001d044899_P001	AT4G24540.1	20129060
AT2G18040.1	Zm00001d052180_P001	AT4G24540.1	20129060

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11766	Sorghum	nucleus	94.35	94.35
Os04t0118500-01	Rice	plastid	85.48	86.18
TraesCS2D01G009700.1	Wheat	cytosol	83.87	85.95
TraesCS2A01G007900.1	Wheat	cytosol, mitochondrion, nucleus	83.87	85.95
HORVU2Hr1G001350.2	Barley	nucleus	83.87	85.25
TraesCS2B01G012800.1	Wheat	cytosol, mitochondrion, nucleus	82.26	82.93
GSMUA_Achr8P19300_001	Banana	cytosol	75.0	78.81
GSMUA_Achr11P...	Banana	nucleus	73.39	77.12
KRH08096	Soybean	cytosol	72.58	71.43
KRH69799	Soybean	cytosol	71.77	70.63
Bra024480.1-P	Field mustard	mitochondrion	67.74	70.59
CDY38175	Canola	cytosol, mitochondrion, nucleus	67.74	70.59
Bra039913.1-P	Field mustard	cytosol, mitochondrion, nucleus	67.74	70.59
CDY25130	Canola	cytosol, mitochondrion, nucleus	67.74	70.59
PGSC0003DMT400004094	Potato	nucleus	66.94	70.34
Solyc01g110530.2.1	Tomato	plastid	66.94	70.34
CDY29218	Canola	mitochondrion	66.94	69.75
CDY20906	Canola	mitochondrion	66.94	69.75
AT2G18040.1	Thale cress	mitochondrion	66.94	69.75
VIT_04s0023g03190.t01	Wine grape	cytosol	62.9	66.1
PGSC0003DMT400051327	Potato	nucleus	66.13	64.57
Solyc02g062250.2.1	Tomato	nucleus	66.13	64.57
HORVU5Hr1G121760.1	Barley	cytosol	29.03	64.29
HORVU4Hr1G072290.1	Barley	cytosol	46.77	59.79
HORVU6Hr1G068220.3	Barley	cytosol	41.94	59.09
TraesCS3B01G116600.1	Wheat	cytosol, mitochondrion, nucleus	37.9	47.47
TraesCS4A01G388100.2	Wheat	cytosol, mitochondrion, nucleus	38.71	44.86
HORVU3Hr1G096490.2	Barley	cytosol	46.77	41.43
TraesCS5B01G513900.1	Wheat	nucleus	35.48	30.34
TraesCS6B01G233500.1	Wheat	mitochondrion, plastid	36.29	24.73
CDX87855	Canola	nucleus	66.94	22.19
Zm00001d006586_P001	Maize	mitochondrion	5.65	4.32

Protein Annotations

EntrezGene:100284136	MapMan:18.12.4	Gene3D:3.10.50.40	ProteinID:AQK42881.1	UniProt:B6TQC5	EMBL:EU967190
GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005829	GO:GO:0005886
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	GO:GO:0032880	InterPro:IPR000297
PFAM:PF00639	InterPro:PPIase_PpiC	InterPro:PPIase_PpiC_CS	ScanProsite:PS01096	PFscan:PS50198	PANTHER:PTHR10657
PANTHER:PTHR10657:SF4	SUPFAM:SSF54534	UniParc:UPI000182DE3C	EnsemblPlantsGene:Zm00001d025062	EnsemblPlants:Zm00001d025062_P001	EnsemblPlants:Zm00001d025062_T001

Description

Peptidyl-prolyl cis-trans isomerase 1

Coordinates

chr10:-:102246913..102250054

Molecular Weight (calculated)

13348.7 Da

IEP (calculated)

9.309

GRAVY (calculated)

-0.435

Length

124 amino acids

Sequence
(BLAST)

001: MSSAAGGVEE TVRASHILIK HEGSRRKASW KDPDGRIISA TTRGDAAARL LDLRNQILSG QANFADLAAR HSDCSSARRG GDLGTFGRRQ MQKPFEDATY
101: ALKVGELSDI VDTDSGVHII LRTA

Best Arabidopsis Sequence Match ( AT2G18040.1 )
(BLAST)

001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA

Arabidopsis Description

PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.