Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00105 | Sorghum | nucleus | 86.64 | 84.39 |
| Os01t0201700-02 | Rice | nucleus | 80.53 | 76.45 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 75.57 | 73.06 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 75.57 | 72.26 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 74.81 | 71.79 |
| KRH14461 | Soybean | nucleus | 27.86 | 70.19 |
| GSMUA_Achr10P... | Banana | nucleus | 60.69 | 69.43 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 56.87 | 65.93 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 74.05 | 62.58 |
| Zm00001d008882_P001 | Maize | nucleus | 78.24 | 62.31 |
| PGSC0003DMT400073134 | Potato | nucleus | 58.02 | 61.29 |
| CDY09267 | Canola | nucleus | 58.02 | 61.04 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 58.78 | 60.63 |
| Solyc02g071730.2.1 | Tomato | nucleus | 56.87 | 60.08 |
| Bra012564.1-P | Field mustard | nucleus | 57.25 | 59.76 |
| AT4G18960.1 | Thale cress | nucleus | 57.25 | 59.52 |
| CDX98597 | Canola | nucleus | 56.87 | 59.36 |
| KRH21150 | Soybean | nucleus | 54.96 | 59.26 |
| CDX78909 | Canola | nucleus | 56.87 | 59.13 |
| Bra013364.1-P | Field mustard | nucleus | 56.87 | 59.13 |
| Zm00001d003409_P001 | Maize | nucleus | 19.08 | 57.47 |
| KRH46066 | Soybean | nucleus | 53.05 | 56.28 |
| Bra004716.1-P | Field mustard | nucleus | 52.29 | 56.15 |
| CDX79857 | Canola | nucleus | 52.29 | 56.15 |
| KRG98899 | Soybean | nucleus | 52.67 | 56.1 |
| KRH42930 | Soybean | nucleus | 51.91 | 55.97 |
| CDX98330 | Canola | nucleus | 52.29 | 55.24 |
| KRH59043 | Soybean | nucleus | 51.15 | 55.14 |
| KRH73684 | Soybean | nucleus | 51.53 | 54.88 |
| Bra014552.1-P | Field mustard | nucleus | 51.91 | 54.84 |
| Zm00001d045227_P001 | Maize | nucleus | 28.24 | 54.81 |
| Bra007419.1-P | Field mustard | nucleus | 50.76 | 54.29 |
| AT2G42830.2 | Thale cress | nucleus | 51.15 | 54.03 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 54.96 | 52.55 |
| Solyc07g055920.2.1 | Tomato | nucleus | 53.44 | 52.43 |
| Zm00001d023955_P003 | Maize | nucleus | 52.67 | 52.08 |
| PGSC0003DMT400044552 | Potato | nucleus | 50.38 | 51.97 |
| GSMUA_Achr10P... | Banana | nucleus | 61.07 | 50.16 |
| Zm00001d037737_P001 | Maize | nucleus | 57.63 | 49.35 |
| CDY49254 | Canola | nucleus | 51.53 | 49.09 |
| CDX89005 | Canola | nucleus | 51.53 | 48.91 |
| AT3G58780.4 | Thale cress | nucleus | 52.29 | 48.75 |
| CDY00589 | Canola | nucleus | 51.15 | 48.73 |
| Zm00001d042591_P002 | Maize | nucleus | 49.62 | 48.51 |
| Zm00001d041781_P001 | Maize | nucleus | 53.05 | 48.43 |
| CDX99406 | Canola | nucleus | 57.25 | 48.08 |
| Bra003356.1-P | Field mustard | nucleus | 47.33 | 45.42 |
| CDX67765 | Canola | nucleus | 52.29 | 39.37 |
| Zm00001d045231_P002 | Maize | nucleus | 32.82 | 38.22 |
| Zm00001d016957_P003 | Maize | nucleus | 33.21 | 36.25 |
| Zm00001d034047_P007 | Maize | nucleus | 32.06 | 35.0 |
| Zm00001d048082_P001 | Maize | nucleus | 32.82 | 34.13 |
| Zm00001d017932_P002 | Maize | nucleus | 29.77 | 33.05 |
| Zm00001d021057_P001 | Maize | nucleus | 30.92 | 32.79 |
| Zm00001d006094_P001 | Maize | nucleus | 31.3 | 32.67 |
| Zm00001d028217_P001 | Maize | nucleus | 31.68 | 32.17 |
| Zm00001d051465_P002 | Maize | nucleus | 35.5 | 31.74 |
| Zm00001d017614_P003 | Maize | nucleus | 33.21 | 31.41 |
| Zm00001d031620_P001 | Maize | nucleus | 29.39 | 30.2 |
| Zm00001d018667_P003 | Maize | nucleus | 30.53 | 29.52 |
| Zm00001d022088_P004 | Maize | nucleus | 29.01 | 29.46 |
| Zm00001d013259_P002 | Maize | nucleus | 30.15 | 28.32 |
| Zm00001d007949_P001 | Maize | nucleus | 30.92 | 26.56 |
| Zm00001d034045_P003 | Maize | nucleus | 29.39 | 26.46 |
| Zm00001d050897_P002 | Maize | nucleus | 30.92 | 25.63 |
| Zm00001d023736_P001 | Maize | nucleus | 24.81 | 25.29 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:542037 | UniProt:A0A1D6MHD4 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | ProteinID:ONM28851.1 |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF332 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004DE8C5A | EnsemblPlantsGene:Zm00001d039434 | EnsemblPlants:Zm00001d039434_P001 | EnsemblPlants:Zm00001d039434_T001 | SEG:seg |
Description
Agamous-like MADS-box protein AGL5
Coordinates
chr3:-:4140509..4150100
Molecular Weight (calculated)
29489.0 Da
IEP (calculated)
9.583
GRAVY (calculated)
-0.777
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNMMTDLSC GPSSKAKGGQ PAAAPGSGGD RQGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALVVFS SRGRLYEYAN NSVKSTIERY
101: KKANSDTSNS GTVAEVNAQH YQQESSKLRQ AIDSLQNANR TIVGDSIHTM GLRELKQMEG KLEKAINKIR ARKNELLYAE VEYMQRREMD LQTDNMYLRS
201: KIAENNNETG QPAMNMIGVP STSEYDHMAS FVDSRNFLQV NMQQQQPQHY SHQLQPTTLQ LG
101: KKANSDTSNS GTVAEVNAQH YQQESSKLRQ AIDSLQNANR TIVGDSIHTM GLRELKQMEG KLEKAINKIR ARKNELLYAE VEYMQRREMD LQTDNMYLRS
201: KIAENNNETG QPAMNMIGVP STSEYDHMAS FVDSRNFLQV NMQQQQPQHY SHQLQPTTLQ LG
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.