Factsheet for Zm00001d028217_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007949_P001
Zm00001d013259_P002
Zm00001d013792_P001
Zm00001d016791_P001
Zm00001d018667_P003
Zm00001d022088_P004
Zm00001d023736_P001
Zm00001d027425_P001
Zm00001d031625_P001
Zm00001d033980_P001
Zm00001d034045_P003
Zm00001d037212_P001
Zm00001d039913_P002
Zm00001d042315_P001
Zm00001d044850_P001
Zm00001d047355_P001
Zm00001d047356_P002
Zm00001d048474_P001
Zm00001d048894_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	Zm00001d013792_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d016791_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d048894_P001	AT1G31630.1	15805477
AT2G03710.1	Zm00001d013792_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d016791_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d048894_P001	AT1G31640.1	15805477
AT2G03710.1	Zm00001d007949_P001	AT1G69120.1	15805477
AT2G03710.1	Zm00001d013259_P002	AT1G69120.1	15805477
AT2G03710.1	Zm00001d018667_P003	AT1G69120.1	15805477
AT2G03710.1	Zm00001d022088_P004	AT1G69120.1	15805477
AT2G03710.1	Zm00001d023736_P001	AT1G69120.1	15805477
AT2G03710.1	Zm00001d034045_P003	AT1G69120.1	15805477
AT2G03710.1	Zm00001d037212_P001	AT1G77980.1	15805477
AT2G03710.1	Zm00001d044850_P001	AT1G77980.1	15805477
AT2G03710.1	Zm00001d027425_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d031625_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d039913_P002	AT2G45660.1	15805477
AT2G03710.1	Zm00001d042315_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d047355_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d047356_P002	AT2G45660.1	15805477
AT2G03710.1	Zm00001d048474_P001	AT2G45660.1	15805477
AT2G03710.1	Zm00001d033980_P001	AT4G14640.1	17360592
AT2G03710.1	Zm00001d007949_P001	AT5G60910.1	15805477
AT2G03710.1	Zm00001d013259_P002	AT5G60910.1	15805477
AT2G03710.1	Zm00001d018667_P003	AT5G60910.1	15805477
AT2G03710.1	Zm00001d022088_P004	AT5G60910.1	15805477
AT2G03710.1	Zm00001d023736_P001	AT5G60910.1	15805477
AT2G03710.1	Zm00001d034045_P003	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93000	Sorghum	nucleus	85.27	90.53
Zm00001d048082_P001	Maize	nucleus	81.78	83.73
Zm00001d045231_P002	Maize	nucleus	63.95	73.33
Os03t0215400-01	Rice	nucleus	72.48	72.76
TraesCS4B01G245700.1	Wheat	nucleus	60.47	72.22
TraesCS4D01G243700.1	Wheat	nucleus	62.79	72.0
TraesCS4A01G058900.1	Wheat	nucleus	46.51	70.59
TraesCS4D01G245200.1	Wheat	nucleus	63.57	66.13
TraesCS4B01G245800.1	Wheat	nucleus	61.63	64.37
TraesCS4A01G028200.1	Wheat	nucleus	55.81	62.07
TraesCS4D01G276100.1	Wheat	nucleus	56.98	61.0
TraesCS4A01G028100.1	Wheat	nucleus	56.59	60.33
TraesCS4B01G277800.1	Wheat	nucleus	56.59	59.11
TraesCS4A01G078700.1	Wheat	nucleus	46.51	54.79
GSMUA_Achr7P26700_001	Banana	nucleus	50.39	54.62
GSMUA_Achr4P14460_001	Banana	nucleus	49.61	53.33
Solyc03g114840.2.1	Tomato	nucleus	50.39	52.85
Zm00001d034047_P007	Maize	nucleus	48.45	52.08
PGSC0003DMT400063315	Potato	nucleus	49.22	51.63
VIT_17s0000g05000.t01	Wine grape	nucleus	49.22	51.63
KRH70973	Soybean	nucleus	48.06	50.82
KRH75123	Soybean	nucleus	47.29	49.59
Zm00001d006094_P001	Maize	nucleus	47.67	49.0
Zm00001d003409_P001	Maize	nucleus	16.28	48.28
TraesCS7B01G021000.1	Wheat	nucleus	34.88	48.13
Zm00001d021057_P001	Maize	nucleus	45.74	47.77
HORVU4Hr1G067680.14	Barley	nucleus	52.33	47.54
Zm00001d031620_P001	Maize	nucleus	45.35	45.88
AT2G03710.1	Thale cress	nucleus	44.96	44.96
CDY02978	Canola	nucleus	44.57	44.92
CDY51202	Canola	nucleus	44.57	44.75
Bra025126.1-P	Field mustard	nucleus	44.57	44.75
Bra026543.1-P	Field mustard	nucleus	46.51	44.61
CDY04164	Canola	nucleus	44.57	44.57
Zm00001d045227_P001	Maize	nucleus	21.32	40.74
Zm00001d051465_P002	Maize	nucleus	45.35	39.93
Bra017376.1-P	Field mustard	nucleus	36.82	39.09
CDY33113	Canola	nucleus	44.57	37.22
Zm00001d022088_P004	Maize	nucleus	37.21	37.21
Zm00001d013259_P002	Maize	nucleus	39.15	36.2
Zm00001d018667_P003	Maize	nucleus	37.98	36.16
Zm00001d017614_P003	Maize	nucleus	38.37	35.74
Zm00001d023955_P003	Maize	nucleus	33.72	32.83
Zm00001d034045_P003	Maize	nucleus	36.82	32.65
Zm00001d016957_P003	Maize	nucleus	30.23	32.5
Zm00001d042591_P002	Maize	nucleus	33.33	32.09
Zm00001d007949_P001	Maize	nucleus	37.6	31.8
CDY45709	Canola	nucleus	21.32	31.79
Zm00001d017932_P002	Maize	nucleus	29.07	31.78
Zm00001d039434_P001	Maize	nucleus	32.17	31.68
Zm00001d023736_P001	Maize	nucleus	31.4	31.52
CDY49686	Canola	nucleus	20.93	31.21
Zm00001d041781_P001	Maize	nucleus	34.5	31.01
Zm00001d037737_P001	Maize	nucleus	31.78	26.8
Zm00001d050897_P002	Maize	nucleus	30.62	25.0
Zm00001d008882_P001	Maize	nucleus	29.84	23.4

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6JT79	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	ProteinID:ONL95077.1	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF206	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000843DFE6	EnsemblPlantsGene:Zm00001d028217	EnsemblPlants:Zm00001d028217_P001	EnsemblPlants:Zm00001d028217_T001	:	:

Description

Zea mays MADS14Developmental protein SEPALLATA 2

Coordinates

chr1:-:26873846..26883816

Molecular Weight (calculated)

30089.8 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.709

Length

258 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY RSSNYSQEVK TPLDTEVSIK YQDYLKLRTR
101: VEFLQTTQRN ILGEDLGPLS MKELEQLEDQ IEISLKHISS RKNQMLLDQL FDLKSKEQEL LDLNKDLRKQ VMQWPPNISV YTYWQLQETR PENALRVSWE
201: EGGHSGASGN VLDPYQGLLQ HLDNDPSLQF GYHHQAYMDQ LNNEDLVDPN EHGRSGWI

Best Arabidopsis Sequence Match ( AT1G24260.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI

Arabidopsis Description

SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.