Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025126.1-P | Field mustard | nucleus | 98.83 | 98.83 |
| CDY02978 | Canola | nucleus | 97.28 | 97.66 |
| CDY04164 | Canola | nucleus | 88.72 | 88.37 |
| AT2G03710.1 | Thale cress | nucleus | 84.82 | 84.5 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 21.01 | 78.26 |
| CDY49686 | Canola | nucleus | 52.14 | 77.46 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 19.84 | 77.27 |
| CDY45709 | Canola | nucleus | 51.75 | 76.88 |
| CDY33113 | Canola | nucleus | 89.11 | 74.11 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 17.51 | 67.16 |
| CDY72391 | Canola | nucleus | 17.9 | 61.33 |
| VIT_01s0011g00110.t01 | Wine grape | nucleus | 57.59 | 60.91 |
| Solyc04g005320.2.1 | Tomato | nucleus | 53.7 | 57.98 |
| KRH70973 | Soybean | nucleus | 54.86 | 57.79 |
| PGSC0003DMT400072891 | Potato | nucleus | 52.92 | 56.2 |
| KRH75123 | Soybean | nucleus | 53.7 | 56.1 |
| Solyc05g012020.2.1 | Tomato | nucleus | 52.53 | 55.79 |
| CDY26462 | Canola | nucleus | 54.86 | 55.51 |
| CDX79856 | Canola | nucleus | 18.68 | 53.93 |
| CDX78653 | Canola | nucleus | 54.09 | 53.67 |
| CDX70651 | Canola | nucleus | 53.7 | 53.28 |
| CDX69499 | Canola | nucleus | 54.47 | 53.03 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 49.03 | 52.5 |
| CDY57524 | Canola | nucleus | 50.97 | 52.4 |
| CDY34718 | Canola | nucleus | 50.97 | 51.98 |
| CDY43239 | Canola | nucleus | 50.19 | 51.6 |
| CDY19977 | Canola | nucleus | 19.84 | 50.0 |
| Zm00001d045231_P002 | Maize | nucleus | 43.58 | 49.78 |
| CDY15724 | Canola | nucleus | 48.64 | 49.6 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 45.91 | 49.17 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 45.53 | 49.16 |
| CDY66153 | Canola | nucleus | 46.69 | 48.98 |
| EER89250 | Sorghum | nucleus | 42.8 | 48.89 |
| CDY11824 | Canola | nucleus | 46.3 | 48.57 |
| CDY27603 | Canola | nucleus | 47.47 | 48.22 |
| OQU93000 | Sorghum | nucleus | 45.53 | 48.15 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 40.47 | 48.15 |
| Os06t0162800-01 | Rice | nucleus | 42.02 | 48.0 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 44.75 | 47.92 |
| CDX84935 | Canola | nucleus | 46.69 | 47.81 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 42.02 | 47.58 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 41.63 | 47.35 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 41.25 | 46.7 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 41.25 | 46.7 |
| Os03t0215400-01 | Rice | nucleus | 46.69 | 46.69 |
| CDX71922 | Canola | nucleus | 24.51 | 46.67 |
| CDY03905 | Canola | nucleus | 49.03 | 46.67 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 40.47 | 46.22 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 40.47 | 45.81 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 40.86 | 45.26 |
| Zm00001d048082_P001 | Maize | nucleus | 44.36 | 45.24 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 39.69 | 44.93 |
| Zm00001d028217_P001 | Maize | nucleus | 44.75 | 44.57 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 42.8 | 44.35 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 41.25 | 43.98 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 40.86 | 43.39 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 41.63 | 43.32 |
| CDY34564 | Canola | nucleus | 36.19 | 42.66 |
| CDY36077 | Canola | nucleus | 36.19 | 42.08 |
| CDY18912 | Canola | nucleus | 39.3 | 41.91 |
| CDY18911 | Canola | nucleus | 38.52 | 41.77 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 40.08 | 41.7 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 27.24 | 41.18 |
| CDY48451 | Canola | nucleus | 23.74 | 39.87 |
| CDX74754 | Canola | nucleus | 39.69 | 39.84 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 42.02 | 39.13 |
| CDY53885 | Canola | nucleus | 37.74 | 37.74 |
| CDX95960 | Canola | nucleus | 37.35 | 37.5 |
| CDY33554 | Canola | nucleus | 37.35 | 37.5 |
| CDY65811 | Canola | nucleus | 36.97 | 37.11 |
| CDY00082 | Canola | nucleus | 35.02 | 36.29 |
| CDY02185 | Canola | nucleus | 33.85 | 36.1 |
| CDY16832 | Canola | nucleus | 33.85 | 36.1 |
| CDY42841 | Canola | nucleus | 33.46 | 35.83 |
| CDY45899 | Canola | nucleus | 34.63 | 35.74 |
| CDY47002 | Canola | nucleus | 33.46 | 35.68 |
| CDY58690 | Canola | nucleus | 33.46 | 35.68 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 38.91 | 35.21 |
| CDX89097 | Canola | nucleus | 33.46 | 34.96 |
| CDX90741 | Canola | nucleus | 31.13 | 34.63 |
| CDX86353 | Canola | nucleus | 33.07 | 34.14 |
| CDY09267 | Canola | nucleus | 33.07 | 34.14 |
| CDX78909 | Canola | nucleus | 33.46 | 34.13 |
| CDY04265 | Canola | nucleus | 36.58 | 33.94 |
| CDX98597 | Canola | nucleus | 33.07 | 33.86 |
| CDX79857 | Canola | nucleus | 31.13 | 32.79 |
| CDY07357 | Canola | nucleus | 36.58 | 32.53 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 27.63 | 32.42 |
| CDY25613 | Canola | nucleus | 28.4 | 32.02 |
| CDX90394 | Canola | nucleus | 28.4 | 31.88 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 22.96 | 31.55 |
| CDX89496 | Canola | nucleus | 28.02 | 31.44 |
| CDX69345 | Canola | nucleus | 27.63 | 31.28 |
| CDX75686 | Canola | nucleus | 27.63 | 31.0 |
| CDX98330 | Canola | nucleus | 29.57 | 30.65 |
| CDX69036 | Canola | nucleus | 28.02 | 30.0 |
| CDX75412 | Canola | nucleus | 28.02 | 30.0 |
| CDY49287 | Canola | nucleus | 28.02 | 30.0 |
| CDY49254 | Canola | nucleus | 31.52 | 29.45 |
| CDX72465 | Canola | nucleus | 27.24 | 29.17 |
| CDX99406 | Canola | nucleus | 33.46 | 27.56 |
| CDX89005 | Canola | nucleus | 29.57 | 27.54 |
| CDY00589 | Canola | nucleus | 29.18 | 27.27 |
| CDY60297 | Canola | nucleus | 29.18 | 25.68 |
| CDY35780 | Canola | nucleus | 19.07 | 24.87 |
| CDX85287 | Canola | nucleus | 17.12 | 23.53 |
| CDY13236 | Canola | mitochondrion | 17.9 | 22.89 |
| CDY65347 | Canola | nucleus | 14.01 | 22.78 |
| CDY42485 | Canola | nucleus | 33.46 | 22.75 |
| CDX67765 | Canola | nucleus | 29.96 | 22.13 |
| CDX71166 | Canola | nucleus | 28.79 | 21.26 |
| CDY01574 | Canola | nucleus | 10.12 | 21.14 |
| CDY71878 | Canola | endoplasmic reticulum | 19.07 | 18.63 |
| CDY65346 | Canola | cytosol | 0.78 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IMQ0 | UniProt:A0A078IMQ0 | EnsemblPlants:CDY51202 | ProteinID:CDY51202 |
| ProteinID:CDY51202.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00002955001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF352 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDE809 | SEG:seg |
Description
BnaA06g39810DBnaA06g39810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMQ0]
Coordinates
chrLK032975:-:22880..25314
Molecular Weight (calculated)
29447.0 Da
IEP (calculated)
9.257
GRAVY (calculated)
-0.720
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMAKMVEK YRKHSYATMD PNQSAKDLQE RYQDYLNLKS
101: RVEVLQHSQR HLLGEEIAWM GVDELEQLER QVDTSLRQIR SRKARSMLDQ LSDLKSKEEM LLETNRDLKR KLEESDATLN QTLWGASSSA EHSQQQQQEG
201: MTSYHANPLS QEVGFFRPLQ GNVALQMSHY NPGVPNASNS ATTSQNVING FFPGWMV
101: RVEVLQHSQR HLLGEEIAWM GVDELEQLER QVDTSLRQIR SRKARSMLDQ LSDLKSKEEM LLETNRDLKR KLEESDATLN QTLWGASSSA EHSQQQQQEG
201: MTSYHANPLS QEVGFFRPLQ GNVALQMSHY NPGVPNASNS ATTSQNVING FFPGWMV
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.