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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Predotar:plastid
PProwler:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69036
CDX69345
CDX70208
CDX72465
CDX74754
CDX75412
CDX75686
CDX78909
CDX84935
CDX86738
CDX89097
CDX90394
CDX92641
CDX98597
CDX99406
CDY02185
CDY03445
CDY03905
CDY09267
CDY11019
CDY11824
CDY13289
CDY15724
CDY16832
CDY18911
CDY18912
CDY25046
CDY27603
CDY34718
CDY42485
CDY42841
CDY43239
CDY44873
CDY47002
CDY49287
CDY50584
CDY53885
CDY57524
CDY58690
CDY60686
CDY66153

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18960.1 CDX84935 AT1G24260.2 9418042
AT4G18960.1 CDY03905 AT1G24260.2 9418042
AT4G18960.1 CDY11824 AT1G24260.2 9418042
AT4G18960.1 CDY15724 AT1G24260.2 9418042
AT4G18960.1 CDY27603 AT1G24260.2 9418042
AT4G18960.1 CDY66153 AT1G24260.2 9418042
AT4G18960.1 CDX70208 AT1G46408.1 15805477
AT4G18960.1 CDY44873 AT1G46408.1 15805477
AT4G18960.1 CDY25046 AT1G48150.1 15805477
AT4G18960.1 CDY50584 AT1G48150.1 15805477
AT4G18960.1 CDX74754 AT2G45650.1 9418042
AT4G18960.1 CDY18911 AT2G45650.1 9418042
AT4G18960.1 CDY18912 AT2G45650.1 9418042
AT4G18960.1 CDY53885 AT2G45650.1 9418042
AT4G18960.1 CDY60686 AT2G45650.1 9418042
AT4G18960.1 CDY34718 AT3G02310.1 15604664
AT4G18960.1 CDY43239 AT3G02310.1 15604664
AT4G18960.1 CDY57524 AT3G02310.1 15604664
AT4G18960.1 CDY34718 AT3G02310.1 15805477
AT4G18960.1 CDY43239 AT3G02310.1 15805477
AT4G18960.1 CDY57524 AT3G02310.1 15805477
AT4G18960.1 CDY34718 AT3G02310.1 9418042
AT4G18960.1 CDY43239 AT3G02310.1 9418042
AT4G18960.1 CDY57524 AT3G02310.1 9418042
AT4G18960.1 CDX69036 AT3G57230.1 15805477
AT4G18960.1 CDX72465 AT3G57230.1 15805477
AT4G18960.1 CDX75412 AT3G57230.1 15805477
AT4G18960.1 CDY49287 AT3G57230.1 15805477
AT4G18960.1 CDX89097 AT3G61120.1 15805477
AT4G18960.1 CDY42485 AT3G61120.1 15805477
AT4G18960.1 CDX86738 AT4G11880.1 15805477
AT4G18960.1 CDY13289 AT4G11880.1 15805477
AT4G18960.1 CDX78909 AT4G18960.1 14555696
AT4G18960.1 CDX98597 AT4G18960.1 14555696
AT4G18960.1 CDX99406 AT4G18960.1 14555696
AT4G18960.1 CDY09267 AT4G18960.1 14555696
AT4G18960.1 CDX92641 AT4G24540.1 15805477
AT4G18960.1 CDY03445 AT4G24540.1 15805477
AT4G18960.1 CDY11019 AT4G24540.1 15805477
AT4G18960.1 CDX69345 AT4G37940.1 15805477
AT4G18960.1 CDX75686 AT4G37940.1 15805477
AT4G18960.1 CDX90394 AT4G37940.1 15805477
AT4G18960.1 CDY25046 AT5G27130.1 15805477
AT4G18960.1 CDY50584 AT5G27130.1 15805477
AT4G18960.1 CDY02185 AT5G60910.1 15805477
AT4G18960.1 CDY16832 AT5G60910.1 15805477
AT4G18960.1 CDY42841 AT5G60910.1 15805477
AT4G18960.1 CDY47002 AT5G60910.1 15805477
AT4G18960.1 CDY58690 AT5G60910.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013364.1-P Field mustard nucleus 80.45 99.6
CDX78909 Canola nucleus 80.45 99.6
CDY09267 Canola nucleus 75.96 95.18
AT4G18960.1 Thale cress nucleus 75.96 94.05
CDX98597 Canola nucleus 75.64 94.02
CDY13236 Canola mitochondrion 58.33 90.55
CDY01574 Canola nucleus 35.26 89.43
VIT_10s0003g02070.t01 Wine grape nucleus 55.77 76.99
CDY72391 Canola nucleus 17.95 74.67
KRH21150 Soybean nucleus 55.77 71.6
CDX71922 Canola nucleus 30.13 69.63
PGSC0003DMT400073134 Potato nucleus 54.81 68.95
Solyc02g071730.2.1 Tomato nucleus 54.81 68.95
CDX79856 Canola nucleus 18.91 66.29
GSMUA_Achr10P... Banana nucleus 48.4 65.94
KRH42930 Soybean nucleus 51.28 65.84
KRH59043 Soybean nucleus 50.32 64.61
GSMUA_Achr5P06590_001 Banana nucleus 35.9 64.0
CDY60686 Canola cytosol, nucleus, plastid 13.46 62.69
CDX98330 Canola nucleus 48.08 60.48
CDX90741 Canola nucleus 44.55 60.17
GSMUA_Achr6P14760_001 Banana nucleus 48.4 59.45
CDX79857 Canola nucleus 45.83 58.61
EES00105 Sorghum nucleus 50.0 57.99
Zm00001d039434_P001 Maize nucleus 48.08 57.25
TraesCS3D01G140200.2 Wheat nucleus 50.0 56.93
TraesCS1B01G144800.1 Wheat nucleus 48.4 56.13
HORVU3Hr1G026650.1 Barley nucleus 48.72 56.09
TraesCS1D01G127700.1 Wheat nucleus 48.08 55.76
TraesCS1A01G125800.1 Wheat nucleus 47.76 55.39
TraesCS3A01G314300.1 Wheat nucleus 48.08 54.95
Os01t0201700-02 Rice nucleus 48.08 54.35
Os05t0203800-02 Rice nucleus 47.12 54.04
TraesCS1D01G262700.1 Wheat nucleus 43.27 54.0
Zm00001d042591_P002 Maize nucleus 45.83 53.36
TraesCS1B01G273300.1 Wheat nucleus 43.27 52.94
CDY49254 Canola nucleus 46.47 52.73
EES01878 Sorghum nucleus 46.79 52.71
CDX89005 Canola nucleus 46.47 52.54
Os01t0886200-01 Rice nucleus 44.55 52.45
CDY00589 Canola nucleus 45.83 52.0
HORVU1Hr1G023620.1 Barley nucleus 41.67 51.59
TraesCS5B01G115100.1 Wheat nucleus 41.03 50.79
TraesCS5D01G118200.1 Wheat nucleus 41.03 50.79
GSMUA_Achr10P... Banana nucleus 51.6 50.47
TraesCS3B01G157500.4 Wheat nucleus 50.0 50.32
TraesCS5A01G117500.1 Wheat nucleus 40.71 50.0
TraesCS1A01G262700.1 Wheat endoplasmic reticulum 43.91 49.82
Os12t0207000-01 Rice nucleus 42.63 49.26
OQU77603 Sorghum nucleus 45.83 48.97
Zm00001d023955_P003 Maize nucleus 41.03 48.3
CDY65347 Canola nucleus 24.04 47.47
EES15827 Sorghum nucleus 40.71 47.21
HORVU1Hr1G029220.1 Barley nucleus 48.72 46.63
Zm00001d037737_P001 Maize nucleus 45.19 46.08
CDY48451 Canola nucleus 22.44 45.75
CDY60297 Canola nucleus 42.63 45.55
CDY19977 Canola nucleus 14.74 45.1
Zm00001d041781_P001 Maize nucleus 41.35 44.95
Zm00001d008882_P001 Maize nucleus 46.15 43.77
CDX67765 Canola nucleus 47.76 42.82
CDY71878 Canola endoplasmic reticulum 32.05 38.02
CDY11824 Canola nucleus 28.85 36.73
CDY66153 Canola nucleus 28.85 36.73
CDY18911 Canola nucleus 27.56 36.29
CDY34564 Canola nucleus 25.32 36.24
CDY36077 Canola nucleus 25.64 36.2
CDX69345 Canola nucleus 25.96 35.68
CDY43239 Canola nucleus 28.53 35.6
CDY25613 Canola nucleus 25.96 35.53
CDY15724 Canola nucleus 28.53 35.32
CDY57524 Canola nucleus 28.21 35.2
CDY27603 Canola nucleus 28.53 35.18
CDX84935 Canola nucleus 28.21 35.06
CDY26462 Canola nucleus 28.53 35.04
CDY42841 Canola nucleus 26.92 35.0
CDX75686 Canola nucleus 25.64 34.93
CDX89496 Canola nucleus 25.64 34.93
CDX90394 Canola nucleus 25.64 34.93
CDY34718 Canola nucleus 28.21 34.92
CDX72465 Canola nucleus 26.6 34.58
CDY04164 Canola nucleus 28.53 34.5
CDX69499 Canola nucleus 29.17 34.47
CDY16832 Canola nucleus 26.6 34.44
CDY18912 Canola nucleus 26.6 34.44
CDY47002 Canola nucleus 26.6 34.44
CDY58690 Canola nucleus 26.6 34.44
CDX74754 Canola nucleus 28.21 34.38
CDX75412 Canola nucleus 26.28 34.17
CDY49287 Canola nucleus 26.28 34.17
CDY02185 Canola nucleus 26.28 34.02
CDX69036 Canola nucleus 25.96 33.75
CDX78653 Canola nucleus 27.88 33.59
CDY51202 Canola nucleus 27.56 33.46
CDY53885 Canola nucleus 27.56 33.46
CDX70651 Canola nucleus 27.56 33.2
CDY02978 Canola nucleus 27.24 33.2
CDY03905 Canola nucleus 28.53 32.96
CDX89097 Canola nucleus 25.0 31.71
CDY65811 Canola nucleus 25.96 31.64
CDX86353 Canola nucleus 24.68 30.92
CDY33554 Canola nucleus 25.32 30.86
CDY00082 Canola nucleus 24.36 30.65
CDY45899 Canola nucleus 24.36 30.52
CDX95960 Canola nucleus 25.0 30.47
CDY04265 Canola nucleus 25.64 28.88
CDY33113 Canola nucleus 27.88 28.16
CDY07357 Canola nucleus 25.32 27.34
CDX71166 Canola nucleus 25.64 22.99
CDY42485 Canola nucleus 25.96 21.43
CDX85287 Canola nucleus 12.18 20.32
CDY45709 Canola nucleus 11.22 20.23
CDY65346 Canola cytosol 1.6 20.0
CDY49686 Canola nucleus 10.9 19.65
CDY35780 Canola nucleus 11.54 18.27
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10GO:A0A078EE45EnsemblPlants:CDX99406ProteinID:CDX99406ProteinID:CDX99406.1
ncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0045944GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00107731001InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879
InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350PFscan:PS50066
PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF187SMART:SM00432SUPFAM:SSF55455InterPro:TF_Kbox
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0004EF3351SEG:seg::
Description
BnaC01g11460D
Coordinates
chrLK031910:-:495401..501947
Molecular Weight (calculated)
35540.3 Da
IEP (calculated)
9.976
GRAVY (calculated)
-0.690
Length
312 amino acids
Sequence
(BLAST)
001: MQLVISSRLD FDPRFQSAAQ PHPSIFCNFS KSHTFQKIIF PREIKLSSLF ISLPPTGAAN MAYQMELGGE SSPQRKAGRG KIEIKRIENT TNRQVTFCKR
101: RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL
201: RNLEGRLDRS VNRIRSKKNE LLFAEIDYMQ KREVDLHNDN QLLRAKIAEN ERNNPSMSLM PGGTNYEQIM PPPQTQPQPF DSRNYFQVAA LQPNNHHYSS
301: AGREDQTALQ LV
Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.