Factsheet for Os05t0203800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201700-02
Os01t0886200-01
Os02t0579600-00
Os02t0682200-01
Os02t0731200-01
Os02t0761000-01
Os03t0186600-01
Os03t0752800-02
Os04t0304400-01
Os04t0580700-01
Os05t0203800-02
Os06t0217300-01
Os06t0347700-00
Os07t0108900-02
Os07t0605200-01
Os08t0431900-00
Os08t0531700-01
Os09t0507200-01
Os12t0207000-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Os02t0682200-01	AT2G45650.1	9418042
AT4G18960.1	Os04t0580700-01	AT2G45650.1	9418042
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15604664
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15604664
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15805477
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15805477
AT4G18960.1	Os08t0531700-01	AT3G02310.1	9418042
AT4G18960.1	Os09t0507200-01	AT3G02310.1	9418042
AT4G18960.1	Os02t0579600-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0731200-01	AT3G57230.1	15805477
AT4G18960.1	Os04t0304400-01	AT3G57230.1	15805477
AT4G18960.1	Os06t0347700-00	AT3G57230.1	15805477
AT4G18960.1	Os08t0431900-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0682200-01	AT3G61120.1	15805477
AT4G18960.1	Os04t0580700-01	AT3G61120.1	15805477
AT4G18960.1	Os01t0201700-02	AT4G18960.1	14555696
AT4G18960.1	Os01t0886200-01	AT4G18960.1	14555696
AT4G18960.1	Os05t0203800-02	AT4G18960.1	14555696
AT4G18960.1	Os12t0207000-01	AT4G18960.1	14555696
AT4G18960.1	Os02t0761000-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0186600-01	AT4G24540.1	15805477
AT4G18960.1	Os06t0217300-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0752800-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0108900-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0605200-01	AT5G60910.1	15805477
AT4G18960.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G127700.1	Wheat	nucleus	76.47	77.32
TraesCS1B01G144800.1	Wheat	nucleus	76.1	76.95
TraesCS1A01G125800.1	Wheat	nucleus	76.1	76.95
KRH14461	Soybean	nucleus	27.57	72.12
Os01t0201700-02	Rice	nucleus	65.81	64.86
HORVU1Hr1G029220.1	Barley	nucleus	76.47	63.8
GSMUA_Achr10P...	Banana	nucleus	53.31	63.32
VIT_10s0003g02070.t01	Wine grape	nucleus	52.21	62.83
OQU77603	Sorghum	nucleus	66.91	62.33
PGSC0003DMT400073134	Potato	nucleus	53.68	58.87
CDY09267	Canola	nucleus	53.31	58.23
Zm00001d037737_P001	Maize	nucleus	65.44	58.17
Solyc02g071730.2.1	Tomato	nucleus	52.94	58.06
Bra013364.1-P	Field mustard	nucleus	53.68	57.94
CDX78909	Canola	nucleus	53.68	57.94
CDX98597	Canola	nucleus	52.94	57.37
Bra012564.1-P	Field mustard	nucleus	52.94	57.37
AT4G18960.1	Thale cress	nucleus	52.57	56.75
KRH21150	Soybean	nucleus	50.37	56.38
KRH73684	Soybean	nucleus	50.74	56.1
KRH42930	Soybean	nucleus	49.63	55.56
KRH46066	Soybean	nucleus	50.37	55.47
KRG98899	Soybean	nucleus	49.63	54.88
KRH59043	Soybean	nucleus	48.9	54.73
GSMUA_Achr6P14760_001	Banana	nucleus	51.1	54.72
Bra014552.1-P	Field mustard	nucleus	49.26	54.03
CDX98330	Canola	nucleus	49.26	54.03
Bra007419.1-P	Field mustard	nucleus	48.53	53.88
CDX79857	Canola	nucleus	48.16	53.69
Bra004716.1-P	Field mustard	nucleus	48.16	53.69
AT2G42830.2	Thale cress	nucleus	48.16	52.82
Solyc07g055920.2.1	Tomato	nucleus	50.0	50.94
VIT_12s0142g00360.t01	Wine grape	nucleus	50.37	50.0
Os12t0207000-01	Rice	nucleus	49.63	50.0
PGSC0003DMT400044552	Potato	nucleus	45.59	48.82
CDY49254	Canola	nucleus	49.26	48.73
Os08t0431900-00	Rice	nucleus	28.31	48.43
AT3G58780.4	Thale cress	nucleus	50.0	48.4
CDX89005	Canola	nucleus	48.9	48.19
CDY00589	Canola	nucleus	48.16	47.64
CDX99406	Canola	nucleus	54.04	47.12
Os01t0886200-01	Rice	nucleus	45.59	46.79
GSMUA_Achr10P...	Banana	nucleus	54.78	46.71
Os06t0347700-00	Rice	nucleus	24.63	45.58
Bra003356.1-P	Field mustard	nucleus	44.85	44.69
Os06t0162800-01	Rice	nucleus	32.35	39.11
CDX67765	Canola	nucleus	49.63	38.79
Os03t0753100-01	Rice	nucleus	31.99	36.4
Os02t0682200-01	Rice	nucleus	33.46	36.4
Os02t0731200-01	Rice	nucleus	31.62	35.68
Os09t0507200-01	Rice	nucleus	31.62	34.68
Os02t0579600-00	Rice	nucleus	30.51	34.58
Os04t0304400-01	Rice	nucleus	28.31	33.92
Os04t0580700-01	Rice	nucleus	31.62	33.86
Os03t0752800-02	Rice	nucleus	29.78	32.93
Os03t0215400-01	Rice	nucleus	30.88	32.68
Os08t0531700-01	Rice	nucleus	29.78	32.53
Os07t0605200-01	Rice	nucleus	29.78	32.53
Os07t0108900-02	Rice	nucleus	28.31	28.84
Os12t0501700-00	Rice	nucleus	23.9	27.9

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AAT85114.1	EMBL:AB232157	EMBL:AK111723	ProteinID:BAS92735.1
ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010582
GO:GO:0030154	GO:GO:0045944	GO:GO:0046983	GO:GO:0048440	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os05g0203800	EnsemblPlants:Os05t0203800-02	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF332
UniProt:Q2V0P1	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0000661FF2	SEG:seg	:	:	:	:

Description

MADS BOX GENE 58Similar to MADS box protein. (Os05t0203800-01);Transcription factor, Floral organ development (Os05t0203800-02)

Coordinates

chr5:-:6446886..6458100

Molecular Weight (calculated)

30832.5 Da

IEP (calculated)

8.706

GRAVY (calculated)

-0.824

Length

272 amino acids

Sequence
(BLAST)

001: MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ VTFCKRRSGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS
101: NNSVKETIER YKKANSDTSN ASTVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI RARKNELLCA EIEYMQRRET
201: ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH YDPRNFLQFN IMHQPQYYPE QEDRKAFMSD ER

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.