Factsheet for Os01t0886200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201700-02
Os01t0886200-01
Os02t0579600-00
Os02t0682200-01
Os02t0731200-01
Os02t0761000-01
Os03t0186600-01
Os03t0752800-02
Os04t0304400-01
Os04t0580700-01
Os05t0203800-02
Os06t0217300-01
Os06t0347700-00
Os07t0108900-02
Os07t0605200-01
Os08t0431900-00
Os08t0531700-01
Os09t0507200-01
Os12t0207000-01
Os12t0501700-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Os02t0682200-01	AT2G45650.1	9418042
AT4G18960.1	Os04t0580700-01	AT2G45650.1	9418042
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15604664
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15604664
AT4G18960.1	Os08t0531700-01	AT3G02310.1	15805477
AT4G18960.1	Os09t0507200-01	AT3G02310.1	15805477
AT4G18960.1	Os08t0531700-01	AT3G02310.1	9418042
AT4G18960.1	Os09t0507200-01	AT3G02310.1	9418042
AT4G18960.1	Os02t0579600-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0731200-01	AT3G57230.1	15805477
AT4G18960.1	Os04t0304400-01	AT3G57230.1	15805477
AT4G18960.1	Os06t0347700-00	AT3G57230.1	15805477
AT4G18960.1	Os08t0431900-00	AT3G57230.1	15805477
AT4G18960.1	Os02t0682200-01	AT3G61120.1	15805477
AT4G18960.1	Os04t0580700-01	AT3G61120.1	15805477
AT4G18960.1	Os01t0201700-02	AT4G18960.1	14555696
AT4G18960.1	Os01t0886200-01	AT4G18960.1	14555696
AT4G18960.1	Os05t0203800-02	AT4G18960.1	14555696
AT4G18960.1	Os12t0207000-01	AT4G18960.1	14555696
AT4G18960.1	Os02t0761000-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0186600-01	AT4G24540.1	15805477
AT4G18960.1	Os06t0217300-01	AT4G24540.1	15805477
AT4G18960.1	Os03t0752800-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0108900-02	AT5G60910.1	15805477
AT4G18960.1	Os07t0605200-01	AT5G60910.1	15805477
AT4G18960.1	Os12t0501700-00	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042591_P002	Maize	nucleus	73.96	73.13
TraesCS1D01G262700.1	Wheat	nucleus	68.3	72.4
EES01878	Sorghum	nucleus	75.47	72.2
TraesCS1B01G273300.1	Wheat	nucleus	66.79	69.41
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	68.3	65.82
VIT_10s0003g02070.t01	Wine grape	nucleus	53.96	63.27
KRH14461	Soybean	nucleus	23.77	60.58
KRH21150	Soybean	nucleus	52.08	56.79
PGSC0003DMT400073134	Potato	nucleus	52.83	56.45
AT4G18960.1	Thale cress	nucleus	53.21	55.95
KRG98899	Soybean	nucleus	51.7	55.69
KRH73684	Soybean	nucleus	51.32	55.28
KRH46066	Soybean	nucleus	51.32	55.06
CDY09267	Canola	nucleus	51.7	55.02
GSMUA_Achr5P06590_001	Banana	nucleus	36.23	54.86
Solyc02g071730.2.1	Tomato	nucleus	51.32	54.84
Bra013364.1-P	Field mustard	nucleus	52.08	54.76
CDX78909	Canola	nucleus	52.08	54.76
Bra012564.1-P	Field mustard	nucleus	51.32	54.18
CDX98597	Canola	nucleus	51.32	54.18
Os12t0207000-01	Rice	nucleus	53.96	52.96
KRH42930	Soybean	nucleus	47.92	52.26
VIT_12s0142g00360.t01	Wine grape	nucleus	53.58	51.82
Bra004716.1-P	Field mustard	nucleus	47.55	51.64
CDX79857	Canola	nucleus	47.55	51.64
AT2G42830.2	Thale cress	nucleus	48.3	51.61
KRH59043	Soybean	nucleus	46.79	51.03
Bra007419.1-P	Field mustard	nucleus	47.17	51.02
Bra014552.1-P	Field mustard	nucleus	47.55	50.81
CDX98330	Canola	nucleus	47.17	50.4
Solyc07g055920.2.1	Tomato	nucleus	49.81	49.44
PGSC0003DMT400044552	Potato	nucleus	46.42	48.43
Os01t0201700-02	Rice	nucleus	50.19	48.19
AT3G58780.4	Thale cress	nucleus	49.43	46.62
Os06t0347700-00	Rice	nucleus	25.66	46.26
Os08t0431900-00	Rice	nucleus	27.55	45.91
CDY49254	Canola	nucleus	47.55	45.82
Os05t0203800-02	Rice	nucleus	46.79	45.59
CDX89005	Canola	nucleus	47.17	45.29
CDY00589	Canola	nucleus	46.42	44.73
CDX99406	Canola	nucleus	52.45	44.55
Bra003356.1-P	Field mustard	nucleus	43.4	42.12
Os06t0162800-01	Rice	nucleus	31.7	37.33
Os04t0304400-01	Rice	nucleus	31.7	37.0
Os02t0579600-00	Rice	nucleus	32.83	36.25
CDX67765	Canola	nucleus	47.55	36.21
Os02t0731200-01	Rice	nucleus	32.83	36.1
Os02t0682200-01	Rice	nucleus	32.45	34.4
Os03t0752800-02	Rice	nucleus	31.32	33.74
Os03t0753100-01	Rice	nucleus	30.19	33.47
Os09t0507200-01	Rice	nucleus	31.32	33.47
Os07t0605200-01	Rice	nucleus	31.32	33.33
Os03t0215400-01	Rice	nucleus	31.7	32.68
Os04t0580700-01	Rice	nucleus	31.32	32.68
Os08t0531700-01	Rice	nucleus	30.19	32.13
Os07t0108900-02	Rice	nucleus	29.81	29.59
Os12t0501700-00	Rice	nucleus	23.77	27.04

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:4324888	EMBL:AK070958	EMBL:AY177693	EMBL:AY551913
ProteinID:BAB90168.1	ProteinID:BAD82119.1	ProteinID:BAS75610.1	ncoils:Coil	ProteinID:EAZ14413.1	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os01g0886200
EnsemblPlants:Os01t0886200-01	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF150	UniProt:Q8RU31	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A0937	RefSeq:XP_015621182.1	SEG:seg

Description

MADS BOX GENE 21Similar to AGAMOUS homolog. (Os01t0886200-01)

Coordinates

chr1:+:38500880..38505086

Molecular Weight (calculated)

29394.8 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.575

Length

265 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENKTSRQVT FCKRRNGLLK KAYELAILCD AEIALIVFSS RGRLYEFSNV NSTRSTIERY KKASASTSGS APVIDVNSHQ YFQQEAAKMR
101: HQIQTLQNAN RHLIGESIGN MTAKELKSLE NRLEKGISRI RSKKHELLFS EIEYMQKREA DLQNENMFLR AKVAEAERAE HDDQQAAEDD EMAPAPAVGG
201: GSSSGTELEA LPATFDTREY YQPAPPVSML AAAAAAAAAQ YSSDHHQTAL HLGYFKVDSG KGGLL

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.