Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G396700.1 | Wheat | nucleus | 94.96 | 95.76 |
| HORVU5Hr1G095710.1 | Barley | nucleus | 92.86 | 93.25 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 92.02 | 92.8 |
| KXG37536 | Sorghum | nucleus | 78.57 | 77.59 |
| Zm00001d034047_P007 | Maize | nucleus | 77.31 | 76.67 |
| Os03t0753100-01 | Rice | nucleus | 76.89 | 76.57 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 49.16 | 51.54 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 48.74 | 51.1 |
| Solyc12g038510.1.1 | Tomato | nucleus | 52.1 | 49.6 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 47.06 | 48.28 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 47.48 | 46.69 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 33.19 | 46.47 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 48.32 | 45.63 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 45.38 | 43.55 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 40.34 | 39.34 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 42.44 | 37.83 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 31.09 | 37.37 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 45.38 | 37.24 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 32.35 | 35.16 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 39.92 | 34.67 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 37.4 | 33.09 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 31.93 | 33.04 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 33.19 | 32.92 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 31.09 | 32.17 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 32.35 | 31.95 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 34.03 | 31.89 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 31.51 | 31.51 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 31.09 | 30.45 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 34.03 | 29.67 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 33.19 | 28.73 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF162 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5A01G391800 | EnsemblPlants:TraesCS5A01G391800.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:588018170..588023759
Molecular Weight (calculated)
27484.2 Da
IEP (calculated)
9.012
GRAVY (calculated)
-0.645
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS SNMLKTLEKY QRYIFASQDA AVPTTDEMQN NYLEYMELKS
101: RVEVLQRSQR NLLGEDLAPL STIELEQLEG QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LQDANMTLKR KLGEIELEAT PDPPQQPQQQ QMWQGDRGVP
201: PHTPPQPEHF FQALERYPSL QPVFRGMDVN QPPPAWMA
101: RVEVLQRSQR NLLGEDLAPL STIELEQLEG QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LQDANMTLKR KLGEIELEAT PDPPQQPQQQ QMWQGDRGVP
201: PHTPPQPEHF FQALERYPSL QPVFRGMDVN QPPPAWMA
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.