Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023706_P002 | Maize | nucleus | 90.5 | 91.4 |
| KXG23150 | Sorghum | nucleus | 92.03 | 90.94 |
| Zm00001d007295_P003 | Maize | nucleus, plastid | 68.12 | 68.2 |
| Zm00001d049125_P002 | Maize | nucleus, plastid | 69.21 | 68.17 |
| CDY67669 | Canola | mitochondrion, nucleus | 15.61 | 60.08 |
| VIT_18s0001g15320.t01 | Wine grape | nucleus, plastid | 50.55 | 50.71 |
| GSMUA_Achr6P18610_001 | Banana | plastid | 48.36 | 50.57 |
| Solyc06g059750.2.1 | Tomato | nucleus, plastid | 44.54 | 48.69 |
| KRH64564 | Soybean | nucleus, plastid | 47.93 | 48.19 |
| Solyc06g059760.2.1 | Tomato | nucleus, plastid | 46.72 | 47.66 |
| CDY14963 | Canola | nucleus, plastid | 38.1 | 47.29 |
| KRH15928 | Soybean | nucleus, plastid | 47.05 | 47.1 |
| KRH18102 | Soybean | plastid | 47.27 | 46.66 |
| Bra032192.1-P | Field mustard | nucleus, plastid | 39.41 | 46.64 |
| CDY40943 | Canola | nucleus, plastid | 38.76 | 45.87 |
| KRH53367 | Soybean | nucleus | 48.03 | 45.79 |
| Bra036931.1-P | Field mustard | nucleus, plastid | 36.35 | 44.88 |
| AT1G43850.1 | Thale cress | nucleus, plastid | 41.16 | 42.99 |
| VIT_04s0044g01260.t01 | Wine grape | plastid | 39.41 | 41.4 |
| GSMUA_Achr5P25900_001 | Banana | nucleus | 37.01 | 35.31 |
| CDY70167 | Canola | cytosol, mitochondrion, nucleus | 10.7 | 34.51 |
| Zm00001d035990_P002 | Maize | plastid | 21.94 | 25.77 |
| Zm00001d045516_P006 | Maize | nucleus, plastid | 21.51 | 25.42 |
| Zm00001d018890_P006 | Maize | nucleus, plastid | 20.74 | 25.23 |
| PGSC0003DMT400092079 | Potato | nucleus | 18.78 | 23.27 |
| CDY69476 | Canola | nucleus | 6.88 | 23.08 |
Protein Annotations
| EnsemblPlants:Zm00001d041803_P001 | EnsemblPlants:Zm00001d041803_T001 | EnsemblPlantsGene:Zm00001d041803 | EntrezGene:103650622 | InterPro:LIM-bd/SEUSS | ncoils:Coil |
| PANTHER:PTHR10378 | PANTHER:PTHR10378:SF17 | PFAM:PF01803 | ProteinID:ONM33705.1 | ProteinID:ONM33710.1 | ProteinID:ONM33714.1 |
| ProteinID:ONM33715.1 | ProteinID:ONM33716.1 | ProteinID:ONM33717.1 | ProteinID:ONM33719.1 | ProteinID:ONM33722.1 | ProteinID:ONM33726.1 |
| ProteinID:ONM33727.1 | SEG:seg | UniParc:UPI0002215725 | UniProt:A0A096TDW4 | MapMan:35.1 | : |
Description
Transcriptional corepressor SEUSS
Coordinates
chr3:+:138823691..138831392
Molecular Weight (calculated)
98507.9 Da
IEP (calculated)
8.843
GRAVY (calculated)
-0.657
Length
916 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGQPNPM GPGQQVGASL LRTTSSLLGG AGGDQPGMGM VGAGGVLPSQ SSPFSSLVSP RTQYGGGSGN GLLAGASSVA SMLSRQHSYG NGGTGAMPGS
101: GAGLPIGGLQ HRGGLDGVGD LVGTGGPDSM VFSSSSSAPG SFGNQLGADG LQQQQMQLDA PHDSQNQQQQ QQQMPMTYNQ QHMMPQTQQQ QQPAVKLENG
201: GVLGGVKLEQ QMGQPDQSVS TQMQRSSSGG VKLEPQLQAL RSLGAVKMEH QSSDPSVVLQ QQQHQQQRHM LQLSKQNPQA AATQLSLLQQ QQLFLQLQQQ
301: QQQHQQQQQI LKNLPLQRNQ LQQQQQQQQQ QQHQHQQLLR QQSLNMRAGK TPAYEPGTCA KRLTHYMYHQ QNRPQDNNIE YWRNFVNEYF APSAKKRWCV
401: SLYGNGRQTT GVFPQDVWHC EICSRKPGRG FETTVEVLPR LCQIKYASGT LEELLYVDMP KESQNSSGQI VLDYTKAIQE SVFEQLRVVR EGHLRIVFNQ
501: DLKIASWEFC ARRHEELIPR RSIIPQVSQL GAVVQKYQSS VQSSASLSSQ DLQNNCNSFV ACARQLAKAL EVPLVNDLGY TKRYVRCLQI AEVVNCMKDL
601: IDHSRQTGSG PIESLHKFPR RGNSGVSSVQ VQQESEGQKP VPQNSNQSGQ NSAPATGMEA SASGNGDATS NNSLNCAPCT SAPSSSSVVG LLQGSVSYRQ
701: DHPTSSGNGI YNGGNSGPAA KANSTNSMQS NGPASFPLPA PSASNGNMMP APQHSSQMNS PTMPSSLPPM QTPASRPQEP EPNEPQSSVQ RILQDLMMQS
801: HINSVGPVGS NMKTANTVGL NGANSLAGNP MTNSPGIING MGFGAMGGLG QQMRTAMGNN ALAMNGRAGT MNHSAHDLAQ LSHQQQQQRD LGNQLLGGLR
901: AANSFNSLQY DWKSSQ
101: GAGLPIGGLQ HRGGLDGVGD LVGTGGPDSM VFSSSSSAPG SFGNQLGADG LQQQQMQLDA PHDSQNQQQQ QQQMPMTYNQ QHMMPQTQQQ QQPAVKLENG
201: GVLGGVKLEQ QMGQPDQSVS TQMQRSSSGG VKLEPQLQAL RSLGAVKMEH QSSDPSVVLQ QQQHQQQRHM LQLSKQNPQA AATQLSLLQQ QQLFLQLQQQ
301: QQQHQQQQQI LKNLPLQRNQ LQQQQQQQQQ QQHQHQQLLR QQSLNMRAGK TPAYEPGTCA KRLTHYMYHQ QNRPQDNNIE YWRNFVNEYF APSAKKRWCV
401: SLYGNGRQTT GVFPQDVWHC EICSRKPGRG FETTVEVLPR LCQIKYASGT LEELLYVDMP KESQNSSGQI VLDYTKAIQE SVFEQLRVVR EGHLRIVFNQ
501: DLKIASWEFC ARRHEELIPR RSIIPQVSQL GAVVQKYQSS VQSSASLSSQ DLQNNCNSFV ACARQLAKAL EVPLVNDLGY TKRYVRCLQI AEVVNCMKDL
601: IDHSRQTGSG PIESLHKFPR RGNSGVSSVQ VQQESEGQKP VPQNSNQSGQ NSAPATGMEA SASGNGDATS NNSLNCAPCT SAPSSSSVVG LLQGSVSYRQ
701: DHPTSSGNGI YNGGNSGPAA KANSTNSMQS NGPASFPLPA PSASNGNMMP APQHSSQMNS PTMPSSLPPM QTPASRPQEP EPNEPQSSVQ RILQDLMMQS
801: HINSVGPVGS NMKTANTVGL NGANSLAGNP MTNSPGIING MGFGAMGGLG QQMRTAMGNN ALAMNGRAGT MNHSAHDLAQ LSHQQQQQRD LGNQLLGGLR
901: AANSFNSLQY DWKSSQ
001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA
Arabidopsis Description
SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.