Factsheet for TraesCS4B01G104300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G174300.3
TraesCS2A01G261200.2
TraesCS2B01G200800.1
TraesCS2B01G281000.1
TraesCS2D01G181400.3
TraesCS2D01G262700.1
TraesCS5A01G391700.1
TraesCS5B01G396600.2
TraesCS5D01G401500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G43850.1	TraesCS2A01G174300.3	AT1G69120.1	16854969
AT1G43850.1	TraesCS2A01G261200.2	AT1G69120.1	16854969
AT1G43850.1	TraesCS2B01G200800.1	AT1G69120.1	16854969
AT1G43850.1	TraesCS2B01G281000.1	AT1G69120.1	16854969
AT1G43850.1	TraesCS2D01G181400.3	AT1G69120.1	16854969
AT1G43850.1	TraesCS2D01G262700.1	AT1G69120.1	16854969
AT1G43850.1	TraesCS5A01G391700.1	AT1G69120.1	16854969
AT1G43850.1	TraesCS5B01G396600.2	AT1G69120.1	16854969
AT1G43850.1	TraesCS5D01G401500.1	AT1G69120.1	16854969

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G101500.1	Wheat	nucleus, plastid	98.68	99.12
TraesCS4A01G211800.1	Wheat	nucleus, plastid	97.48	97.69
HORVU4Hr1G017160.3	Barley	nucleus, plastid	94.19	93.17
TraesCS4B01G104400.2	Wheat	nucleus, plastid	87.5	85.44
Os11t0207000-01	Rice	nucleus, plastid	82.46	82.28
Os11t0207100-01	Rice	nucleus	83.44	81.56
KXG28056	Sorghum	nucleus, plastid	79.5	77.29
Zm00001d049125_P002	Maize	nucleus, plastid	78.29	76.77
Zm00001d007295_P003	Maize	nucleus, plastid	76.64	76.39
CDY67669	Canola	mitochondrion, nucleus	15.24	58.4
GSMUA_Achr6P18610_001	Banana	plastid	50.11	52.17
VIT_18s0001g15320.t01	Wine grape	nucleus, plastid	50.44	50.38
KRH64564	Soybean	nucleus, plastid	50.11	50.16
KRH15928	Soybean	nucleus, plastid	49.23	49.07
Solyc06g059750.2.1	Tomato	nucleus, plastid	44.74	48.69
Solyc06g059760.2.1	Tomato	nucleus, plastid	47.92	48.66
CDY14963	Canola	nucleus, plastid	39.04	48.24
KRH18102	Soybean	plastid	48.79	47.95
KRH53367	Soybean	nucleus	50.44	47.87
CDY40943	Canola	nucleus, plastid	38.82	45.74
Bra032192.1-P	Field mustard	nucleus, plastid	38.82	45.74
Bra036931.1-P	Field mustard	nucleus, plastid	36.95	45.42
AT1G43850.1	Thale cress	nucleus, plastid	41.56	43.22
VIT_04s0044g01260.t01	Wine grape	plastid	41.01	42.89
CDY70167	Canola	cytosol, mitochondrion, nucleus	11.4	36.62
GSMUA_Achr5P25900_001	Banana	nucleus	38.27	36.35
CDY69476	Canola	nucleus	7.89	26.37
TraesCS7B01G437100.1	Wheat	plastid	21.71	24.54
TraesCS7B01G047100.4	Wheat	plastid	21.16	22.68
PGSC0003DMT400092079	Potato	nucleus	18.31	22.6

Protein Annotations

EnsemblPlants:TraesCS4B01G104300.1	EnsemblPlantsGene:TraesCS4B01G104300	InterPro:LIM-bd/SEUSS	ncoils:Coil	PANTHER:PTHR10378	PANTHER:PTHR10378:SF17
PFAM:PF01803	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4B:+:110703078..110713868

Molecular Weight (calculated)

99342.2 Da

IEP (calculated)

8.751

GRAVY (calculated)

-0.711

Length

912 amino acids

Sequence
(BLAST)

001: MVSSGPPNPM GPGQPMGAAS LLRTNSSLLS GGQQGMGSGG MLQSQSPFSS LVSPRTQFSG NGLLGGSSNA SPLLNRQSFG NGGTVPGPGQ MANGGLPMNT
101: LQQRGGLDGA GDLIGMGGSD PMSSSQVSLG NHLGSDNLQQ QQKMDMQDLQ QQQQHHQQLP MSYNQQQLST QPLQLHATVK MENGGSIGGV KLEQQMGQLD
201: QNGPAQMMRN AGNVKFEPHQ LQSLRGLGAV KMEQPNSDPS AFLQQQQQQQ QQHHLLQLTK QNPQAAAAAQ LNLLQQQRIM HMQQQQQQQI LKNLPLQRNQ
301: LQQQQQQQQQ QHQHQQQQLL RQQSLNIRTP GKPASYEPGT CAKRLTHYMY HQQNRPQDNN IEYWRNFVNE YFAPTAKKRW CVSLYGTGRQ TTGVFPQDVW
401: HCEICNRKPG RGFETTVEVL PRLCQIKYAS GTLEELLYID MPRESKNASG QIVLDYTKAI QESVFEQLRV VREGHLRIIF NPDLKIASWE FCARRHEELI
501: PRRSIVPQVS QLGAVVQKYQ AAAHTPTSLT TQDMQNNCNS FVACARQLAK ALEVPLVNDL GYTKRYVRCL QIAEVVNCMK DLIDHSKQTG SGPIDSLHKF
601: PRRTPSGINP LQPQQQQPEE QQSVPQSSNQ SGQNSAPMAG AQASASANAD VTSNNSLSCA PSTSAPSPTV MGILQGSIDS SQDHLMSSAN GQYNSGNNGA
701: IPKVNSASSL QSNPSTSFPS QVPISSNNNM MPALQNTNQL SSPAVSSNLP PMQPPATRSQ EPEQSDAQSS VERILQEMMS SQMNGVGHAG NDMKRPNGFT
801: PGINGVNCLL GNAVTNHSGV GGMGLGAMGG FGSNPTANGL RMAVTNNAMA MNGRMGMHHS AHDLSQLGQQ QQQQQQQQQQ QQQQHDIGNQ LLGGLRAGNS
901: FNNLQYDWKP SQ

Best Arabidopsis Sequence Match ( AT1G43850.1 )
(BLAST)

001: MVPSEPPNPV GGGENVPPSI LGGQGGAPLP SQPAFPSLVS PRTQFGNNMS MSMLGNAPNI SSLLNNQSFV NGIPGSMISM DTSGAESDPM SNVGFSGLSS
101: FNASSMVSPR SSGQVQGQQF SNVSANQLLA EQQRNKKMET QSFQHGQQQS MQQQFSTVRG GGLAGVGPVK MEPGQVSNDQ QHGQVQQQQQ KMLRNLGSVK
201: LEPQQIQAMR NLAQVKMEPQ HSEQSLFLQQ QQRQQQQQQQ QQFLQMPGQS PQAQMNIFQQ QRLMQLQQQQ LLKSMPQQRP QLPQQFQQQN LPLRPPLKPV
301: YEPGMGAQRL TQYMYRQQHR PEDNNIEFWR KFVAEYFAPN AKKRWCVSMY GSGRQTTGVF PQDVWHCEIC NRKPGRGFEA TAEVLPRLFK IKYESGTLEE
401: LLYVDMPRES QNSSGQIVLE YAKATQESVF EHLRVVRDGQ LRIVFSPDLK IFSWEFCARR HEELIPRRLL IPQVSQLGSA AQKYQQAAQN ATTDSALPEL
501: QNNCNMFVAS ARQLAKALEV PLVNDLGYTK RYVRCLQISE VVNSMKDLID YSRETRTGPI ESLAKFPRRT GPSSALPGPS PQQASDQLRQ QQQQQQQQQQ
601: QQQQQQQQQQ QQQTVSQNTN SDQSSRQVAL MQGNPSNGVN YAFNAASAST STSSIAGLIH QNSMKGRHQN AAYNPPNSPY GGNSVQMQSP SSSGTMVPSS
701: SQQQHNLPTF QSPTSSSNNN NPSQNGIPSV NHMGSTNSPA MQQAGEVDGN ESSSVQKILN EILMNNQAHN NSSGGSMVGH GSFGNDGKGQ ANVNSSGVLL
801: MNGQVNNNNN TNIGGAGGFG GGIGQSMAAN GINNINGNNS LMNGRVGMMV RDPNGQQDLG NQLLGAVNGF NNFDWNA

Arabidopsis Description

SEUTranscriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.