Factsheet for VIT_18s0001g08380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00200.t01
VIT_02s0025g04630.t01
VIT_02s0154g00220.t01
VIT_03s0038g00050.t01
VIT_06s0004g02580.t01
VIT_06s0004g07910.t01
VIT_07s0205g00030.t01
VIT_08s0007g01290.t01
VIT_08s0007g02550.t01
VIT_09s0002g01710.t01
VIT_17s0000g01270.t01
VIT_17s0000g07800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT4G08150.1	VIT_03s0038g00050.t01	AT2G16400.1	15781858
AT4G08150.1	VIT_07s0205g00030.t01	AT2G22680.1	21798944
AT4G08150.1	VIT_06s0004g02580.t01	AT2G27990.1	15781858
AT4G08150.1	VIT_08s0007g02550.t01	AT3G52525.1	15781858
AT4G08150.1	VIT_09s0002g01710.t01	AT4G08520.1	21798944
AT4G08150.1	VIT_02s0154g00220.t01	AT4G12450.1	21798944
AT4G08150.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858
AT4G08150.1	VIT_08s0007g01290.t01	AT5G02030.1	12897247
AT4G08150.1	VIT_08s0007g01290.t01	AT5G02030.1	15019989
AT4G08150.1	VIT_08s0007g01290.t01	AT5G02030.1	15781858
AT4G08150.1	VIT_02s0025g00200.t01	AT5G41410.1	11701881
AT4G08150.1	VIT_02s0025g00200.t01	AT5G41410.1	15781858
AT4G08150.1	VIT_02s0025g00200.t01	AT5G41410.1	17873098
AT4G08150.1	VIT_17s0000g07800.t01	AT5G50100.1	21798944
AT4G08150.1	VIT_17s0000g01270.t01	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0673000-00	Rice	nucleus	17.57	84.42
CDY34012	Canola	nucleus	42.43	81.35
GSMUA_Achr5P01960_001	Banana	nucleus	39.46	76.04
PGSC0003DMT400012712	Potato	nucleus	71.62	73.61
Solyc04g077210.2.1	Tomato	nucleus	70.54	73.52
KRH15482	Soybean	nucleus	75.95	72.99
KRG88661	Soybean	nucleus	75.41	72.09
GSMUA_Achr4P28270_001	Banana	nucleus	52.16	71.22
GSMUA_Achr7P08050_001	Banana	nucleus	50.54	70.3
GSMUA_Achr2P13200_001	Banana	nucleus	60.54	63.82
GSMUA_Achr7P27540_001	Banana	nucleus	59.46	62.86
Bra000638.1-P	Field mustard	nucleus	65.68	62.79
AT4G08150.1	Thale cress	nucleus	67.3	62.56
GSMUA_Achr4P03120_001	Banana	nucleus	48.92	62.41
CDX83145	Canola	nucleus	65.41	60.2
GSMUA_Achr10P...	Banana	nucleus	42.16	60.0
GSMUA_Achr6P04640_001	Banana	nucleus	57.57	59.66
GSMUA_Achr3P26230_001	Banana	nucleus	51.62	59.32
GSMUA_Achr4P32230_001	Banana	nucleus	55.14	59.13
TraesCS2B01G268200.1	Wheat	nucleus	54.05	57.64
TraesCS2A01G267400.1	Wheat	nucleus	53.78	57.35
Os07t0129700-01	Rice	nucleus	54.86	57.18
TraesCS2D01G256400.1	Wheat	nucleus	53.51	57.06
Zm00001d018742_P001	Maize	nucleus	54.05	56.98
Os03t0727000-02	Rice	nucleus	55.14	56.51
EER95833	Sorghum	nucleus	54.05	56.18
TraesCS5B01G410600.1	Wheat	nucleus	46.76	54.75
TraesCS4A01G256700.1	Wheat	nucleus	53.51	54.7
TraesCS4D01G058000.1	Wheat	nucleus	53.51	54.7
TraesCS4B01G057900.1	Wheat	nucleus	53.51	54.55
HORVU2Hr1G061320.3	Barley	nucleus, plastid	52.7	54.47
Zm00001d033859_P002	Maize	nucleus	52.7	54.32
EER90950	Sorghum	nucleus	52.43	53.89
Zm00001d007842_P002	Maize	nucleus	52.16	53.61
HORVU4Hr1G009730.1	Barley	nucleus	52.7	53.57
CDY68624	Canola	nucleus	50.27	53.3
TraesCS5A01G405900.1	Wheat	nucleus	47.3	52.55
TraesCS5D01G415900.1	Wheat	nucleus	48.11	52.51
OQU90921	Sorghum	nucleus	48.92	51.86
VIT_01s0127g00210.t01	Wine grape	nucleus	42.43	49.37
VIT_17s0000g08710.t01	Wine grape	nucleus	42.16	48.9
TraesCS4A01G292200.1	Wheat	nucleus	41.62	48.28
HORVU4Hr1G003360.1	Barley	nucleus	41.08	47.35
TraesCS4B01G021900.2	Wheat	nucleus	41.35	47.08
EER91090	Sorghum	nucleus	42.16	46.71
Os03t0771500-01	Rice	nucleus	41.62	45.83
TraesCS4D01G019600.1	Wheat	nucleus	41.62	45.29
VIT_12s0059g01190.t01	Wine grape	nucleus	44.05	45.15
VIT_10s0116g00190.t01	Wine grape	nucleus	42.43	44.86
Zm00001d033861_P001	Maize	nucleus	43.51	44.72
OQU91064	Sorghum	nucleus	44.05	43.94
HORVU5Hr1G098570.6	Barley	plastid	47.84	43.6
VIT_14s0060g01180.t01	Wine grape	nucleus	36.49	43.55
TraesCS4B01G022000.1	Wheat	nucleus	34.05	42.0
TraesCS4D01G019800.1	Wheat	nucleus	36.49	41.93
TraesCS4D01G019900.1	Wheat	nucleus	36.49	41.41
Zm00001d033404_P002	Maize	nucleus	41.35	41.24
Os03t0727200-00	Rice	nucleus	40.54	41.1
TraesCS4A01G291900.1	Wheat	nucleus	35.41	39.82
TraesCS4A01G292100.1	Wheat	nucleus	35.41	39.7
Os03t0673500-00	Rice	nucleus	36.49	39.24
HORVU4Hr1G003410.3	Barley	nucleus	36.76	38.53
TraesCS4A01G292000.1	Wheat	cytosol, nucleus, plastid	15.68	38.16
Zm00001d013559_P001	Maize	cytosol, mitochondrion, nucleus	16.76	38.04
Zm00001d034212_P001	Maize	nucleus	49.73	38.02
TraesCS4A01G251800.1	Wheat	nucleus	15.68	34.94
VIT_15s0021g01750.t01	Wine grape	nucleus	20.0	32.31
Os03t0772100-00	Rice	vacuole	35.68	31.73
VIT_02s0025g04630.t01	Wine grape	nucleus	22.43	28.52
VIT_11s0118g00800.t01	Wine grape	nucleus	26.22	22.56
VIT_04s0008g06130.t01	Wine grape	nucleus	25.68	22.25

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100255834	wikigene:100255834	MapMan:15.5.3.4	ProteinID:CCB45710	ProteinID:CCB45710.1
InterPro:ELK_dom	UniProt:F6H159	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX1	InterPro:KNOX2	EntrezGene:LOC100255834	wikigene:LOC100255834	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF203	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI00015C75A9	ArrayExpress:VIT_18s0001g08380	EnsemblPlantsGene:VIT_18s0001g08380	EnsemblPlants:VIT_18s0001g08380.t01	unigene:Vvi.16658	RefSeq:XP_002285521
RefSeq:XP_002285521.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:6870669..6876386

Molecular Weight (calculated)

42513.6 Da

IEP (calculated)

6.104

GRAVY (calculated)

-0.913

Length

370 amino acids

Sequence
(BLAST)

001: MEDYNQLGEN TTSRASFLYT SSVLAPNSSV YGRTSSGSNA NNQQTQVPIN TFHLQSGECF QSEAHPVVKT EASTSQHAQK FHYPIIRGHQ TVDHQQQQQG
101: NESFSEVEAI KAKIIAHPQY SNLLEAYMDC QKVGAPPEVV ERLAAVRQEF ESRQRSSVTC RDASKDPELD QFMEAYYDML VKYREELTRP LQEATDFMRR
201: IESQLNMLSN GPVRIFTSDE KCEGVGSSEE DQDNSGGETE LPEIDPRAED RELKNHLLRK YSGYLSSLKQ ELSKKKKKGK LPKDARQKLL NWWELHYKWP
301: YPSETEKVAL AETTGLDQKQ INNWFINQRK RHWKPSEDMQ FMVMDGLHPQ NAALYMESHY MGDGAYRLGP

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.