CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89055
EER91079
EER92018
EER92948
EER94592
EES03882
EES03931
EES08513
EES11304
EES17536
EES18304
EES18336
KXG20488
KXG24130
KXG31078
KXG35813
KXG38947
KXG40303
KXG40306
OQU81040
OQU82538
OQU84501
OQU85631

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	EES17536	AT1G22630.1	21798944
AT4G08150.1	KXG40306	AT1G62990.1	15781858
AT4G08150.1	EER91079	AT2G16400.1	15781858
AT4G08150.1	KXG24130	AT2G16400.1	15781858
AT4G08150.1	OQU81040	AT2G22680.1	21798944
AT4G08150.1	EER92948	AT3G52525.1	15781858
AT4G08150.1	EER94592	AT3G52525.1	15781858
AT4G08150.1	EES03931	AT3G52525.1	15781858
AT4G08150.1	EES11304	AT3G52525.1	15781858
AT4G08150.1	EES18304	AT3G52525.1	15781858
AT4G08150.1	OQU85631	AT3G52525.1	15781858
AT4G08150.1	KXG35813	AT4G08520.1	21798944
AT4G08150.1	KXG31078	AT4G12450.1	21798944
AT4G08150.1	KXG38947	AT4G12450.1	21798944
AT4G08150.1	EES03882	AT5G02030.1	12897247
AT4G08150.1	EES18336	AT5G02030.1	12897247
AT4G08150.1	EES03882	AT5G02030.1	15019989
AT4G08150.1	EES18336	AT5G02030.1	15019989
AT4G08150.1	EES03882	AT5G02030.1	15781858
AT4G08150.1	EES18336	AT5G02030.1	15781858
AT4G08150.1	KXG20488	AT5G11060.1	15781858
AT4G08150.1	OQU84501	AT5G11060.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	11701881
AT4G08150.1	EER92018	AT5G41410.1	11701881
AT4G08150.1	KXG40303	AT5G41410.1	11701881
AT4G08150.1	EER89055	AT5G41410.1	15781858
AT4G08150.1	EER92018	AT5G41410.1	15781858
AT4G08150.1	KXG40303	AT5G41410.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	17873098
AT4G08150.1	EER92018	AT5G41410.1	17873098
AT4G08150.1	KXG40303	AT5G41410.1	17873098
AT4G08150.1	OQU82538	AT5G50100.1	21798944
AT4G08150.1	EES08513	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G410600.1	Wheat	nucleus	65.62	72.47
TraesCS5A01G405900.1	Wheat	nucleus	67.62	70.87
TraesCS5D01G415900.1	Wheat	nucleus	68.48	70.5
Zm00001d034212_P001	Maize	nucleus	89.97	64.88
EER95833	Sorghum	nucleus	63.61	62.36
CDY34012	Canola	nucleus	33.81	61.14
HORVU5Hr1G098570.6	Barley	plastid	68.48	58.87
GSMUA_Achr10P...	Banana	nucleus	42.69	57.31
Os03t0771500-01	Rice	nucleus	50.72	52.68
VIT_18s0001g08380.t01	Wine grape	nucleus	51.86	48.92
Solyc04g077210.2.1	Tomato	nucleus	47.56	46.76
KRH15482	Soybean	nucleus	51.0	46.23
EER90950	Sorghum	nucleus	47.56	46.11
KRG88661	Soybean	nucleus	51.0	45.99
PGSC0003DMT400012712	Potato	nucleus	46.99	45.56
KRH61471	Soybean	nucleus	46.7	45.15
EER91090	Sorghum	nucleus	42.41	44.31
AT4G08150.1	Thale cress	nucleus	49.57	43.47
Bra000638.1-P	Field mustard	nucleus	47.85	43.15
OQU91064	Sorghum	nucleus	44.41	41.78
CDX83145	Canola	nucleus	47.85	41.54
EES00633	Sorghum	nucleus	34.96	41.5
EES18954	Sorghum	nucleus	35.82	41.25
Os03t0772100-00	Rice	vacuole	42.12	35.34
CDY68624	Canola	nucleus	34.67	34.67
OQU84501	Sorghum	nucleus	24.07	27.45
KXG20488	Sorghum	nucleus	24.64	26.96
KXG40306	Sorghum	nucleus	22.06	23.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:8084184	UniProt:A0A1Z5S4S3	InterPro:ELK_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	EnsemblPlants:OQU90921	ProteinID:OQU90921
ProteinID:OQU90921.1	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF203	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	EnsemblPlantsGene:SORBI_3001G075101	SUPFAM:SSF46689	UniParc:UPI0001A82CA9	RefSeq:XP_002466383.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:5717538..5727233

Molecular Weight (calculated)

38715.6 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.719

Length

349 amino acids

Sequence
(BLAST)

001: MDSFGDLGGG GGRSSSKAAS FLQLPLPAST SSAQQVFPPP DGRQHHSSRF ALQQLLADPS AAQQHSHQKD AAAIVQGEMS SPPADGDADT IKAKIMSHPQ
101: YSALLAAYLD CQKVGAPPDV SDRLSAMAAK LGAQPGPSRW REPTTRPDPE LDQFMEAYCN MLVKFQEEMA RPIQEATEFF KSVERQLQLG SISDSSNCEV
201: AGSSEDEQDA SCPEDIDPCA EDKELKHQLL RKYGGYLGGL RQEFSKRKKK GKLPKEARQK LLHWWELHYK WPYPSETEKM ALAETTGLDQ KQINNWFINQ
301: RKRHWKPASE DMPFAMMEGG FHVPQGTAAL YMDRPPPFMA DGGMYRLGS

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.