CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90950
EER91090
EER95833
KXG40306
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	KXG40306	AT1G62990.1	15781858
AT3G52525.1	EER90950	AT4G08150.1	15781858
AT3G52525.1	EER91090	AT4G08150.1	15781858
AT3G52525.1	EER95833	AT4G08150.1	15781858
AT3G52525.1	OQU90921	AT4G08150.1	15781858
AT3G52525.1	OQU91064	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038283_P001	Maize	nucleus	76.42	76.75
TraesCS1B01G284700.1	Wheat	plastid	61.14	61.95
TraesCS1A01G275500.1	Wheat	nucleus, plastid	61.57	61.57
TraesCS1D01G275100.1	Wheat	plastid	60.26	60.26
HORVU1Hr1G074020.1	Barley	nucleus, plastid	59.39	59.91
Os05t0440900-00	Rice	plastid	57.64	57.14
EES03931	Sorghum	plastid	52.84	51.27
GSMUA_Achr6P19470_001	Banana	nucleus	33.62	41.4
GSMUA_Achr9P02660_001	Banana	mitochondrion	30.57	35.35
GSMUA_AchrUn_...	Banana	mitochondrion	31.88	32.88
Solyc11g068780.1.1	Tomato	cytosol	19.21	32.12
PGSC0003DMT400050511	Potato	cytosol	19.21	31.65
GSMUA_Achr6P18350_001	Banana	mitochondrion	29.69	31.48
Solyc01g007800.2.1	Tomato	mitochondrion	23.14	29.12
PGSC0003DMT400042334	Potato	mitochondrion	23.14	28.8
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	23.14	28.49
KRH32810	Soybean	mitochondrion	21.83	28.25
Solyc10g082050.1.1	Tomato	mitochondrion	21.83	28.09
KRH67981	Soybean	mitochondrion	22.71	27.37
KRG96237	Soybean	mitochondrion	22.71	27.23
KRH72226	Soybean	mitochondrion	20.52	27.01
PGSC0003DMT400072347	Potato	mitochondrion, plastid	21.83	26.45
CDX75076	Canola	nucleus	20.96	25.81
Bra005303.1-P	Field mustard	mitochondrion, plastid	20.52	25.27
AT3G52525.1	Thale cress	plastid	17.47	25.16
AT2G36026.1	Thale cress	nucleus, plastid	20.09	25.14
Bra017266.1-P	Field mustard	nucleus	20.09	24.73
CDY43753	Canola	nucleus	20.09	24.73
KXG20752	Sorghum	cytosol, nucleus	17.47	22.6
KRH26670	Soybean	mitochondrion	17.9	22.04
KRH22646	Soybean	mitochondrion, nucleus	17.03	21.2
KRH25295	Soybean	nucleus, plastid	17.9	21.03
KRH30374	Soybean	nucleus, plastid	17.9	20.81
EER94592	Sorghum	mitochondrion	23.14	18.79
KXG33158	Sorghum	cytosol, plastid	11.35	18.7
EES17897	Sorghum	nucleus, plastid	21.4	16.23
OQU85631	Sorghum	plastid	21.4	15.91
EER92948	Sorghum	plastid	17.47	15.69
EES17993	Sorghum	nucleus, plastid	16.16	14.98
EES03313	Sorghum	nucleus	26.2	14.46
EES02214	Sorghum	mitochondrion, nucleus	23.58	14.29
OQU90474	Sorghum	mitochondrion	17.03	14.08
OQU78505	Sorghum	nucleus	21.83	13.89
EER92692	Sorghum	mitochondrion	17.03	12.5
EES11304	Sorghum	plastid	21.4	11.98
EES18387	Sorghum	mitochondrion	19.65	11.94
OQU92638	Sorghum	mitochondrion	13.97	10.88
EES01480	Sorghum	nucleus	16.16	10.45
EES19813	Sorghum	nucleus	15.28	10.45
KXG33624	Sorghum	nucleus	19.65	8.29

Protein Annotations

MapMan:15.5.37	EntrezGene:8072501	UniProt:C5YYR9	EnsemblPlants:EES18304	ProteinID:EES18304	ProteinID:EES18304.1
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF32	EnsemblPlantsGene:SORBI_3009G153900	TIGRFAMs:TIGR01568	UniParc:UPI0001A88867	RefSeq:XP_002439874.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:51027589..51028798

Molecular Weight (calculated)

24685.9 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.366

Length

229 amino acids

Sequence
(BLAST)

001: MSLAGGGWSR RGGGGSRFEQ PPPVVVVDVG CNCRAPRLLS SFISSLKSHA RGVVGKPKSS PHVSSSSFWS SSATTGFTSS TSITTATTTL SSLDHHHPSC
101: GPATYAANAN VYEVDDDADH ATRQRRRRRL RRRRRSTSTS TCGRAAALGE ETAVAVAVEV ESAAPYEDFR ESMVAMVTEK EMYAWEDLNA LLQQFLALNS
201: PRHHPHILTA FADLWAPRGG PFCPPSPCL

Best Arabidopsis Sequence Match ( AT3G52525.1 )
(BLAST)

001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY

Arabidopsis Description

OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.