CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
peroxisome 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009993_P001	Maize	nucleus, plastid	77.33	73.75
TraesCS2B01G410500.1	Wheat	mitochondrion	57.49	56.13
TraesCS2A01G392200.1	Wheat	mitochondrion	57.89	55.64
HORVU2Hr1G093380.1	Barley	mitochondrion	56.68	54.9
TraesCS2D01G390300.1	Wheat	mitochondrion	56.68	54.9
Os05t0324600-01	Rice	nucleus	51.01	48.46
EES18387	Sorghum	mitochondrion	30.77	20.16
EES19813	Sorghum	nucleus	25.51	18.81
KXG20752	Sorghum	cytosol, nucleus	13.36	18.64
OQU90474	Sorghum	mitochondrion	20.65	18.41
OQU92638	Sorghum	mitochondrion	20.24	17.01
EES03931	Sorghum	plastid	16.19	16.95
EES18304	Sorghum	nucleus, plastid	14.98	16.16
EES01480	Sorghum	nucleus	22.27	15.54
KXG33158	Sorghum	cytosol, plastid	8.5	15.11
EER94592	Sorghum	mitochondrion	17.0	14.89
KXG33624	Sorghum	nucleus	30.77	14.0
EER92948	Sorghum	plastid	14.17	13.73
EES17897	Sorghum	nucleus, plastid	16.6	13.58
OQU85631	Sorghum	plastid	16.6	13.31
EES02214	Sorghum	mitochondrion, nucleus	17.41	11.38
EER92692	Sorghum	mitochondrion	13.36	10.58
OQU78505	Sorghum	nucleus	15.38	10.56
EES03313	Sorghum	nucleus	17.41	10.36
EES11304	Sorghum	plastid	15.79	9.54

Protein Annotations

MapMan:15.5.37	EntrezGene:8061285	UniProt:C5YVT8	InterPro:DNA_bnd_dom_ovate	EnsemblPlants:EES17993	ProteinID:EES17993
ProteinID:EES17993.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF5	EnsemblPlantsGene:SORBI_3009G095800	TIGRFAMs:TIGR01568	UniParc:UPI0001A88B5B	RefSeq:XP_002439563.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:31711879..31712928

Molecular Weight (calculated)

28393.9 Da

IEP (calculated)

10.328

GRAVY (calculated)

-0.768

Length

247 amino acids

Sequence
(BLAST)

001: MSNHHRFKLS HLMPNSWFYK LWDTKKPRPP SKRNCETTRI SKRSSHYCHG SITPKPLPLS PHPSYSYYPN TKHNMSLDQK LRPSTLHLNP KASDIQFPRD
101: HHHHHRPAST MVIDAKHEFQ GLQLRPIRTR AVLTGSTSGT CPSSPRLRRT RLPALNGNSV ITTTSAIGGR RSAARRSLAV VKTSTDPPRD FKESMVEMIV
201: ENDMNAPEDM QELLECYLSL NSREYHGVIK EVFREIWLQI VQDIAED

Best Arabidopsis Sequence Match ( AT5G01840.1 )
(BLAST)

001: MGNNYRFKLS ELIPNAWFYK LRDMSKSKKK NLQSQPNSTT SKKKHHAVPT PTSTTPLSPR PPRRPSHSSK APPSHPPRKS SGNRLRHRAT VDSKSSTTSG
101: DSTTTETGSF SPDFRSDQVL LPDESLTGSW HSPCSSKLSK TATFTPPPEL ELRPIITKTA ATARKTAVNS PAGVRLRMRS PRISVSSSAR RSGSSARRSR
201: AVVKASVDPK RDFKESMEEM IAENKIRATK DLEELLACYL CLNSDEYHAI IINVFKQIWL DLNLPPPHSK

Arabidopsis Description

OFP1Transcription repressor OFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.