CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0583600-01	Rice	cytosol	14.17	76.12
EES03313	Sorghum	nucleus	41.94	36.39
KXG20752	Sorghum	cytosol, nucleus	16.67	33.9
EES02214	Sorghum	mitochondrion, nucleus	30.0	28.57
Bra020055.1-P	Field mustard	mitochondrion	16.11	28.16
CDY44933	Canola	mitochondrion	16.11	28.16
CDY42284	Canola	mitochondrion	15.83	27.54
CDX92512	Canola	mitochondrion	15.83	26.64
CDY58970	Canola	mitochondrion	15.83	26.64
EES17897	Sorghum	nucleus, plastid	21.67	25.83
Bra002252.1-P	Field mustard	mitochondrion	15.28	25.82
EER92692	Sorghum	mitochondrion	22.22	25.64
AT5G19650.1	Thale cress	mitochondrion, nucleus	15.56	25.34
KXG33158	Sorghum	cytosol, plastid	9.72	25.18
EES03931	Sorghum	plastid	15.83	24.15
GSMUA_Achr1P04990_001	Banana	nucleus	19.72	23.91
GSMUA_Achr9P05500_001	Banana	nucleus	21.11	23.24
PGSC0003DMT400000838	Potato	nucleus	17.78	22.86
KRH60283	Soybean	mitochondrion, nucleus	18.06	22.81
KRH41574	Soybean	mitochondrion, nucleus	17.78	21.84
EES18304	Sorghum	nucleus, plastid	13.89	21.83
EER94592	Sorghum	mitochondrion	15.56	19.86
OQU85631	Sorghum	plastid	16.67	19.48
EER92948	Sorghum	plastid	13.33	18.82
OQU90474	Sorghum	mitochondrion	13.06	16.97
OQU92638	Sorghum	mitochondrion	13.06	15.99
EES01480	Sorghum	nucleus	15.56	15.82
EES19813	Sorghum	nucleus	14.44	15.52
EES17993	Sorghum	nucleus, plastid	10.56	15.38
EES11304	Sorghum	plastid	16.39	14.43
EES18387	Sorghum	mitochondrion	14.44	13.79
KXG33624	Sorghum	nucleus	15.28	10.13

Protein Annotations

EnsemblPlants:OQU78505	EnsemblPlantsGene:SORBI_3009G247500	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF12	PFAM:PF04844	PFscan:PS51754	ProteinID:OQU78505	ProteinID:OQU78505.1	SEG:seg
TIGRFAMs:TIGR01568	UniParc:UPI000B8B9C7F	UniProt:A0A1Z5R4Z5	MapMan:15.5.37	:	:

Description

hypothetical protein

Coordinates

chr9:+:58292827..58293998

Molecular Weight (calculated)

37811.0 Da

IEP (calculated)

11.355

GRAVY (calculated)

-0.653

Length

360 amino acids

Sequence
(BLAST)

001: MEKSRRHDKQ QQAGVGMGGR LRQQLAQMLL HTSCAATTTT TSATAFVGLA STTNATTFAA SRQQLPPPPP ARGRPRGAHA HEPRSSCRSV VVGDGSSSSC
101: QRRHRHHHRR RDARALVHIS IDCSARSSVA AAAAVLQPSA PVPTTLRSKG KAGGGSGRSR LPRSPSYGYG WSWSSSSASD TDGEAAPFSS EAEGLEEEAG
201: TASLSFSSDS VSDLYGTTNN NNGGAGGTRP RRRKKKPPPP RRARASSRQP ATADAFRPPA GKKGEERKSG DGSSRCGCGS AMAASSAAAG STAVVKRSRN
301: PYADFRSSMV EMVAGRRIRG ADALSELLVW YLSLNSPRHH PAIVAAFEDV WEAVLGSGEP

Best Arabidopsis Sequence Match ( AT5G19650.1 )
(BLAST)

001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P

Arabidopsis Description

OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.