CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19650.1	KRH03376	AT3G48100.1	18642946
AT5G19650.1	KRH54462	AT3G48100.1	18642946
AT5G19650.1	KRH57009	AT3G48100.1	18642946
AT5G19650.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41574	Soybean	mitochondrion, nucleus	92.98	90.44
Os05t0583600-01	Rice	cytosol	11.58	49.25
AT5G19650.1	Thale cress	mitochondrion, nucleus	34.74	44.8
Bra002252.1-P	Field mustard	mitochondrion	32.63	43.66
CDY58970	Canola	mitochondrion	32.63	43.46
CDX92512	Canola	mitochondrion	32.63	43.46
CDY44933	Canola	mitochondrion	30.88	42.72
Bra020055.1-P	Field mustard	mitochondrion	30.88	42.72
CDY42284	Canola	mitochondrion	29.82	41.06
GSMUA_Achr11P...	Banana	nucleus	21.05	38.22
PGSC0003DMT400000838	Potato	nucleus	36.14	36.79
KRH50362	Soybean	cytosol	15.09	34.4
GSMUA_Achr2P19920_001	Banana	nucleus	23.16	34.38
KRG96237	Soybean	mitochondrion	21.4	31.94
KRH67981	Soybean	mitochondrion	21.05	31.58
KRH32810	Soybean	mitochondrion	18.95	30.51
KRH72226	Soybean	mitochondrion	18.6	30.46
KXG20752	Sorghum	cytosol, nucleus	17.19	27.68
GSMUA_Achr1P04990_001	Banana	nucleus	27.02	25.93
GSMUA_Achr8P15960_001	Banana	nucleus	32.28	25.92
KRH51868	Soybean	mitochondrion	22.46	25.4
GSMUA_Achr9P05500_001	Banana	nucleus	29.12	25.38
KRH26670	Soybean	mitochondrion	16.49	25.27
KRH61189	Soybean	mitochondrion	22.46	24.71
KRH25295	Soybean	nucleus, plastid	16.84	24.62
KRH22646	Soybean	mitochondrion, nucleus	15.79	24.46
Os01t0226700-01	Rice	mitochondrion, nucleus	21.05	24.0
KRH30374	Soybean	nucleus, plastid	16.49	23.86
TraesCS3A01G228900.1	Wheat	nucleus	25.26	21.69
TraesCS3D01G159700.1	Wheat	mitochondrion, nucleus	26.67	21.65
TraesCS3D01G227100.1	Wheat	nucleus	24.91	21.39
TraesCS3A01G151800.1	Wheat	nucleus, plastid	26.32	21.25
TraesCS3B01G178800.1	Wheat	nucleus	25.96	20.9
EES17897	Sorghum	nucleus, plastid	22.11	20.86
HORVU3Hr1G030870.1	Barley	nucleus	25.96	20.67
HORVU3Hr1G055980.1	Barley	nucleus	24.21	20.54
EES02214	Sorghum	mitochondrion, nucleus	27.02	20.37
TraesCS3B01G255700.1	Wheat	nucleus	23.51	20.0
Zm00001d039313_P001	Maize	mitochondrion	26.32	19.89
KXG33158	Sorghum	cytosol, plastid	9.47	19.42
Zm00001d037814_P001	Maize	plastid	19.3	19.37
Os01t0625900-01	Rice	nucleus	23.51	18.31
EES03313	Sorghum	nucleus	26.32	18.07
OQU78505	Sorghum	nucleus	22.81	18.06
KRH65447	Soybean	nucleus	23.16	17.05
Zm00001d011410_P001	Maize	nucleus, plastid	23.51	16.79
Zm00001d044167_P001	Maize	mitochondrion, nucleus	24.56	16.43
KRH76106	Soybean	nucleus	21.75	16.1
KRH00468	Soybean	nucleus	20.7	16.08
KRH40761	Soybean	nucleus	21.4	15.8
KRH17171	Soybean	nucleus, plastid	20.35	15.51
KRH72818	Soybean	nucleus	20.7	15.4
KRG98156	Soybean	nucleus	20.7	15.32
KRH30114	Soybean	nucleus	19.65	15.3
KRH59028	Soybean	plastid	15.44	10.76
KRH42918	Soybean	plastid	15.44	10.65
KRH11062	Soybean	plastid	10.88	8.38
KRH21207	Soybean	plastid	11.93	8.21

Protein Annotations

EntrezGene:100819861	MapMan:15.5.37	EMBL:ACUP02003357	EnsemblPlantsGene:GLYMA_05G230900	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	UniProt:I1K5V1	InterPro:IPR006458
EnsemblPlants:KRH60283	ProteinID:KRH60283	ProteinID:KRH60283.1	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF24	TIGRFAMs:TIGR01568	UniParc:UPI000233A9F9	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:40864783..40866071

Molecular Weight (calculated)

33009.1 Da

IEP (calculated)

10.371

GRAVY (calculated)

-0.823

Length

285 amino acids

Sequence
(BLAST)

001: MENQNRLKLR ISRMFRSSFG SCRTRNLTDV MEKAVFAPPN PIEVEPPSPK TINNTCILSF KDSLPRRKIS EWSSPFVLGG GSKNKNNNLN LNLGVMSCPP
101: TSSNISLNTV HEQDFGYDDK KKVSTKNSRT KKKKKKKKKR RAQNKREFFP FNSCARDTNF GGYWWYSSDE DDETDTLFSS KSLSSDSSRS RRRCRRREND
201: RSSDMGVLPL HGKVKDTFAV VKRSSDPYSD FRTSMLEMIV EKQIFSPADL ENLLQCFLSL NSHHHHKIIV HVFTEIWEAL FSDWF

Best Arabidopsis Sequence Match ( AT5G19650.1 )
(BLAST)

001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P

Arabidopsis Description

OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.