Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19650.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0583600-01 | Rice | cytosol | 11.07 | 46.27 |
| KRH60283 | Soybean | mitochondrion, nucleus | 36.79 | 36.14 |
| KRH41574 | Soybean | mitochondrion, nucleus | 36.79 | 35.15 |
| Bra020055.1-P | Field mustard | mitochondrion | 25.36 | 34.47 |
| CDY44933 | Canola | mitochondrion | 25.36 | 34.47 |
| CDY42284 | Canola | mitochondrion | 25.0 | 33.82 |
| GSMUA_Achr11P... | Banana | nucleus | 18.93 | 33.76 |
| PGSC0003DMT400050511 | Potato | cytosol | 16.43 | 33.09 |
| AT5G19650.1 | Thale cress | mitochondrion, nucleus | 26.07 | 33.03 |
| CDX92512 | Canola | mitochondrion | 25.0 | 32.71 |
| CDY58970 | Canola | mitochondrion | 25.0 | 32.71 |
| Bra002252.1-P | Field mustard | mitochondrion | 24.64 | 32.39 |
| GSMUA_Achr2P19920_001 | Banana | nucleus | 21.07 | 30.73 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 19.29 | 29.35 |
| PGSC0003DMT400095058 | Potato | plastid | 24.29 | 28.69 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 18.57 | 27.51 |
| GSMUA_Achr1P04990_001 | Banana | nucleus | 26.79 | 25.25 |
| KXG20752 | Sorghum | cytosol, nucleus | 15.0 | 23.73 |
| GSMUA_Achr8P15960_001 | Banana | nucleus | 29.29 | 23.1 |
| GSMUA_Achr9P05500_001 | Banana | nucleus | 26.07 | 22.32 |
| PGSC0003DMT400033048 | Potato | mitochondrion, nucleus, plastid | 27.86 | 22.29 |
| HORVU3Hr1G055980.1 | Barley | nucleus | 25.0 | 20.83 |
| Os01t0226700-01 | Rice | mitochondrion, nucleus | 18.57 | 20.8 |
| PGSC0003DMT400011286 | Potato | nucleus | 21.07 | 20.77 |
| TraesCS3B01G255700.1 | Wheat | nucleus | 24.29 | 20.3 |
| TraesCS3D01G227100.1 | Wheat | nucleus | 23.93 | 20.18 |
| TraesCS3A01G228900.1 | Wheat | nucleus | 23.93 | 20.18 |
| Os01t0625900-01 | Rice | nucleus | 25.71 | 19.67 |
| TraesCS3D01G159700.1 | Wheat | mitochondrion, nucleus | 23.93 | 19.09 |
| Zm00001d037814_P001 | Maize | plastid | 19.29 | 19.01 |
| TraesCS3A01G151800.1 | Wheat | nucleus, plastid | 23.93 | 18.98 |
| PGSC0003DMT400045857 | Potato | mitochondrion | 26.79 | 18.89 |
| EES17897 | Sorghum | nucleus, plastid | 20.36 | 18.87 |
| HORVU3Hr1G030870.1 | Barley | nucleus | 23.93 | 18.72 |
| TraesCS3B01G178800.1 | Wheat | nucleus | 23.57 | 18.64 |
| Zm00001d039313_P001 | Maize | mitochondrion | 24.64 | 18.3 |
| PGSC0003DMT400078126 | Potato | nucleus | 22.86 | 18.23 |
| EES02214 | Sorghum | mitochondrion, nucleus | 24.29 | 17.99 |
| OQU78505 | Sorghum | nucleus | 22.86 | 17.78 |
| KXG33158 | Sorghum | cytosol, plastid | 8.57 | 17.27 |
| PGSC0003DMT400037629 | Potato | plastid | 25.71 | 17.06 |
| EES03313 | Sorghum | nucleus | 23.57 | 15.9 |
| Zm00001d011410_P001 | Maize | nucleus, plastid | 22.5 | 15.79 |
| Zm00001d044167_P001 | Maize | mitochondrion, nucleus | 22.86 | 15.02 |
| PGSC0003DMT400073252 | Potato | nucleus | 18.21 | 12.44 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400000838 | EnsemblPlantsGene:PGSC0003DMG400000313 | EntrezGene:102593156 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C |
| PANTHER:PTHR33057 | PANTHER:PTHR33057:SF24 | PFAM:PF04844 | PFscan:PS51754 | PGSC:PGSC0003DMG400000313 | RefSeq:XP_006353457.1 |
| SEG:seg | TIGRFAMs:TIGR01568 | UniParc:UPI000294884E | UniProt:M0ZHF0 | MapMan:15.5.37 | : |
Description
Ovate [Source:PGSC_GENE;Acc:PGSC0003DMG400000313]
Coordinates
chr12:+:4510044..4511292
Molecular Weight (calculated)
32437.2 Da
IEP (calculated)
9.643
GRAVY (calculated)
-0.932
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MENRFKMKIS SLFKSSFGSC KSKNISDDID NNKKPVFHTQ NHQHYQLVDL FSPKPSPFPS MFRHKCPQNP LPSSGVRRNF LQAATSVYCH NSTLDTNGRK
101: CPPASPNFPH DEYSQEKCNS KYYEKNSKKK NKKKKFKKMT NSKIKKFTNF DEEFANFHYK GLFSSDEESE LDEDDNNTLF SSRSFTNSDS SEYSLRRKPR
201: RRRAAKGGVK GSLAVVKKSK DPYGDFRDSM LEMIMENQIF GAKELENLLE CFLKLNSQYH HEVIIDVFTE ICEALFSSLS
101: CPPASPNFPH DEYSQEKCNS KYYEKNSKKK NKKKKFKKMT NSKIKKFTNF DEEFANFHYK GLFSSDEESE LDEDDNNTLF SSRSFTNSDS SEYSLRRKPR
201: RRRAAKGGVK GSLAVVKKSK DPYGDFRDSM LEMIMENQIF GAKELENLLE CFLKLNSQYH HEVIIDVFTE ICEALFSSLS
001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P
Arabidopsis Description
OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.