CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19650.1	KRH03376	AT3G48100.1	18642946
AT5G19650.1	KRH54462	AT3G48100.1	18642946
AT5G19650.1	KRH57009	AT3G48100.1	18642946
AT5G19650.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60283	Soybean	mitochondrion, nucleus	90.44	92.98
Os05t0583600-01	Rice	cytosol	11.26	49.25
AT5G19650.1	Thale cress	mitochondrion, nucleus	34.13	45.25
CDX92512	Canola	mitochondrion	32.08	43.93
CDY58970	Canola	mitochondrion	32.08	43.93
Bra002252.1-P	Field mustard	mitochondrion	31.74	43.66
CDY44933	Canola	mitochondrion	30.38	43.2
Bra020055.1-P	Field mustard	mitochondrion	30.38	43.2
CDY42284	Canola	mitochondrion	29.35	41.55
GSMUA_Achr11P...	Banana	nucleus	20.48	38.22
PGSC0003DMT400000838	Potato	nucleus	35.15	36.79
KRH50362	Soybean	cytosol	14.68	34.4
GSMUA_Achr2P19920_001	Banana	nucleus	22.53	34.38
KRG96237	Soybean	mitochondrion	21.16	32.46
KRH67981	Soybean	mitochondrion	20.82	32.11
KRH32810	Soybean	mitochondrion	18.77	31.07
KRH72226	Soybean	mitochondrion	18.43	31.03
KXG20752	Sorghum	cytosol, nucleus	16.72	27.68
GSMUA_Achr1P04990_001	Banana	nucleus	26.96	26.6
KRH26670	Soybean	mitochondrion	16.38	25.81
GSMUA_Achr8P15960_001	Banana	nucleus	31.06	25.63
KRH51868	Soybean	mitochondrion	21.84	25.4
GSMUA_Achr9P05500_001	Banana	nucleus	28.33	25.38
KRH25295	Soybean	nucleus, plastid	16.72	25.13
KRH22646	Soybean	mitochondrion, nucleus	15.7	25.0
KRH61189	Soybean	mitochondrion	21.84	24.71
KRH30374	Soybean	nucleus, plastid	16.04	23.86
Os01t0226700-01	Rice	mitochondrion, nucleus	20.14	23.6
TraesCS3A01G228900.1	Wheat	nucleus	24.91	21.99
TraesCS3D01G227100.1	Wheat	nucleus	24.57	21.69
TraesCS3D01G159700.1	Wheat	mitochondrion, nucleus	25.94	21.65
TraesCS3A01G151800.1	Wheat	nucleus, plastid	25.6	21.25
EES17897	Sorghum	nucleus, plastid	21.84	21.19
HORVU3Hr1G055980.1	Barley	nucleus	24.23	21.13
TraesCS3B01G178800.1	Wheat	nucleus	25.26	20.9
HORVU3Hr1G030870.1	Barley	nucleus	25.26	20.67
EES02214	Sorghum	mitochondrion, nucleus	26.28	20.37
TraesCS3B01G255700.1	Wheat	nucleus	23.21	20.3
Zm00001d039313_P001	Maize	mitochondrion	25.6	19.89
KXG33158	Sorghum	cytosol, plastid	9.22	19.42
Zm00001d037814_P001	Maize	plastid	18.43	19.01
Os01t0625900-01	Rice	nucleus	23.21	18.58
OQU78505	Sorghum	nucleus	21.84	17.78
EES03313	Sorghum	nucleus	24.91	17.59
KRH65447	Soybean	nucleus	22.18	16.8
Zm00001d011410_P001	Maize	nucleus, plastid	22.18	16.29
Zm00001d044167_P001	Maize	mitochondrion, nucleus	23.21	15.96
KRH76106	Soybean	nucleus	20.82	15.84
KRH00468	Soybean	nucleus	19.8	15.8
KRH17171	Soybean	nucleus, plastid	20.14	15.78
KRH72818	Soybean	nucleus	20.48	15.67
KRG98156	Soybean	nucleus	20.48	15.58
KRH30114	Soybean	nucleus	19.45	15.57
KRH40761	Soybean	nucleus	20.48	15.54
KRH59028	Soybean	plastid	15.36	11.0
KRH42918	Soybean	plastid	15.36	10.9
KRH11062	Soybean	plastid	10.92	8.65
KRH21207	Soybean	plastid	11.95	8.45

Protein Annotations

EMBL:ACUP02004772	EnsemblPlants:KRH41574	EnsemblPlantsGene:GLYMA_08G038400	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C
PANTHER:PTHR33057	PANTHER:PTHR33057:SF24	PFAM:PF04844	PFscan:PS51754	ProteinID:KRH41574	ProteinID:KRH41574.1
SEG:seg	TIGRFAMs:TIGR01568	UniParc:UPI00023380CF	UniProt:I1KQ18	MapMan:15.5.37	:

Description

hypothetical protein

Coordinates

chr8:+:3011265..3012684

Molecular Weight (calculated)

33972.3 Da

IEP (calculated)

10.498

GRAVY (calculated)

-0.842

Length

293 amino acids

Sequence
(BLAST)

001: MENHNRLKLR ISRMFRSSFG SCRTRNLTDV MEKTVFAPPS PIDEPPSPKT RPIFRPKTIN DTCILSFKDS HSLPRRKISE WSSPFVVGGG NKIKNNNLNL
101: NLGVMSCPPT SPNISLNTIH EHDFGYDDKK KVSTKNSRTN KKKKKKKKKR HAQKKREFFP FNSCAKDTNF GGYWWYSSDE DDETDTLFSS KSLSSDSSRS
201: RRRRRNNERS SDMGVLPLNG KVKDTFAVVK RSSDPYSDFR TSMLEMIVEK QIFSPADLEN LLQCFLSLNS HHHHKIIVHV FTEIWEALFS DWF

Best Arabidopsis Sequence Match ( AT5G19650.1 )
(BLAST)

001: MEKRMKLRVS RIVRSSLSSC RPRDLYDVVE TCAVTSKATS SERFFVTKAK TKTPSRPKSH ASSCPRASPI FPPNPFYEES RSFRDLRKKV KTNRKQRSQF
101: GSDPLFASRF KSTGSWYWSC SEEEDEGDKE ESEDDDSDTL FSSRSFSSDS SKAESFAVVK KSKDPYEDFR TSMVEMIVER QIFAPAELQQ LLQCFLSLNS
201: RQHHKVIVQV FLEIYATLFS P

Arabidopsis Description

OFP8Transcription repressor OFP8 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9B4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.