CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038473_P001	Maize	mitochondrion	77.72	80.05
Os05t0477200-01	Rice	nucleus	49.87	44.44
TraesCS1D01G299500.1	Wheat	nucleus	41.64	42.2
TraesCS1A01G300100.1	Wheat	mitochondrion	42.44	42.11
TraesCS1B01G310200.1	Wheat	mitochondrion, plastid	38.73	40.9
HORVU1Hr1G069900.1	Barley	endoplasmic reticulum, mitochondrion, nucleus, plastid	41.64	37.29
KXG33624	Sorghum	nucleus	47.21	32.78
EES17993	Sorghum	nucleus, plastid	20.16	30.77
OQU90474	Sorghum	mitochondrion	19.1	25.99
OQU92638	Sorghum	mitochondrion	19.36	24.83
EES19813	Sorghum	nucleus	19.89	22.39
EES03931	Sorghum	plastid	13.0	20.76
EES01480	Sorghum	nucleus	18.83	20.06
KXG20752	Sorghum	cytosol, nucleus	9.28	19.77
EES18304	Sorghum	nucleus, plastid	11.94	19.65
EER92948	Sorghum	plastid	13.0	19.22
EER92692	Sorghum	mitochondrion	14.59	17.63
KXG33158	Sorghum	cytosol, plastid	6.1	16.55
EER94592	Sorghum	mitochondrion	12.2	16.31
EES17897	Sorghum	nucleus, plastid	13.0	16.23
OQU85631	Sorghum	plastid	12.47	15.26
OQU78505	Sorghum	nucleus	13.79	14.44
EES02214	Sorghum	mitochondrion, nucleus	13.79	13.76
EES03313	Sorghum	nucleus	15.12	13.73
EES11304	Sorghum	plastid	14.32	13.2

Protein Annotations

MapMan:15.5.37	EntrezGene:8076998	UniProt:C5YZR9	InterPro:DNA_bnd_dom_ovate	EnsemblPlants:EES18387	ProteinID:EES18387
ProteinID:EES18387.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFAM:PF13724	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF22	EnsemblPlantsGene:SORBI_3009G173400	TIGRFAMs:TIGR01568	UniParc:UPI0001A88975	RefSeq:XP_002439957.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:52864166..52865950

Molecular Weight (calculated)

41588.0 Da

IEP (calculated)

10.736

GRAVY (calculated)

-0.784

Length

377 amino acids

Sequence
(BLAST)

001: MGRRRFRLAD MMPNSWFYKL RDMRRQRGHP PATGGGGVAS AAMLPSSSPP PPQRGARRSA TRPASPRRGS VALPHRTSYY YPTRDRELPA PEPKDAATEE
101: DRQHRQLLPQ HQQQSPPRCS RRRHRVGAVR VGRGLEAPTG ARRRRDMYVG RDGSDDEDDD VDEVRRPAVI AASDYSVSGK VIASETDIVI DLCSESTAER
201: VLRPIVTRPA MREVVRYELK ETHVVDVADT TTPAGGSSAS EQGSNKSHPR RPSVSVGRRL RTRVNSPRLA STTTRSSRKS ISKPTTPGAS PRRKTTTPAP
301: PAPLAESFAV VKSSANPRRD FRESMEEMIA EKGIRDAADL EDLLACYLAL NAAEHHDLIV EVFEEIWSSL AVAGANP

Best Arabidopsis Sequence Match ( AT1G06920.1 )
(BLAST)

001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK

Arabidopsis Description

OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.