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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:
  • plastid 2
  • nucleus 1
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, nucleus, plastid
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:nucleus
TargetP:mitochondrion
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G300100.1 Wheat mitochondrion 71.26 78.95
TraesCS1B01G310200.1 Wheat mitochondrion, plastid 66.75 78.71
TraesCS1D01G299500.1 Wheat nucleus 69.12 78.23
Zm00001d038473_P001 Maize mitochondrion 37.29 42.9
Os05t0477200-01 Rice nucleus 42.76 42.55
EES18387 Sorghum mitochondrion 37.29 41.64
HORVU3Hr1G081260.2 Barley mitochondrion 34.68 37.24
HORVU2Hr1G093380.1 Barley mitochondrion 17.58 29.02
HORVU3Hr1G071640.1 Barley nucleus 15.91 23.18
HORVU4Hr1G049960.1 Barley mitochondrion 14.73 22.14
HORVU3Hr1G083700.1 Barley plastid 10.45 19.64
HORVU1Hr1G049440.1 Barley mitochondrion 11.16 18.88
HORVU1Hr1G076490.1 Barley nucleus 15.91 18.87
HORVU1Hr1G074020.1 Barley nucleus, plastid 9.5 17.62
HORVU3Hr1G055980.1 Barley nucleus 12.83 16.07
HORVU6Hr1G065900.1 Barley mitochondrion, plastid 10.69 15.15
HORVU4Hr1G083150.1 Barley plastid 9.03 15.02
HORVU4Hr1G070860.1 Barley cytosol, mitochondrion 10.93 13.69
HORVU3Hr1G030870.1 Barley nucleus 11.64 13.69
HORVU2Hr1G094240.1 Barley cytosol, mitochondrion, plastid 10.45 12.26
Protein Annotations
MapMan:15.5.37UniProt:A0A287G3W8InterPro:DNA_bnd_dom_ovateGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0045892EnsemblPlantsGene:HORVU1Hr1G069900EnsemblPlants:HORVU1Hr1G069900.1InterPro:IPR006458InterPro:OvateInterPro:Ovate_C
PFAM:PF04844PFAM:PF13724PFscan:PS51754PANTHER:PTHR33057PANTHER:PTHR33057:SF22TIGRFAMs:TIGR01568
UniParc:UPI000B481B72SEG:seg::::
Description
No Description!
Coordinates
chrchr1H:+:487565412..487566959
Molecular Weight (calculated)
46717.3 Da
IEP (calculated)
10.831
GRAVY (calculated)
-0.815
Length
421 amino acids
Sequence
(BLAST)
001: WSCSYFLFPR WSPAPPLHLV LSYRANRART GGRRGRMVRR KFRLSDMIPN AWFYKLRDMR PRGGGGVGVH HRSSSARSYQ PPSWNRESSA RWSVEAAPQP
101: PSSRWNRAAD NDVKQPEADV EPPVTPTKGS PRAPLPRRAS YYYSTRDREV PAPPAPKPPR AKDAPSPARS SRRRHRVGHA TGERAPASAS VPAQGKEPVV
201: DAAGRSCRRR DLCIKSDGGE PRRPRATGPP DDGLNVKVIA SHNEIIIDLQ EKDTPERRLR PIVTRPARRQ PKPNEQDGNN VDLADVTARA SCASEESSIS
301: KPRLSSASLS GRRRLKTLAK SPRLTATGKK VKPPARNWTA SPPLLPAPVI VSSYPVVKMS EDPGQDFRES MEDMISAKGI HEAEDLEDLL ACYLSLNDAE
401: HHDLIIEVFE QIWVSLASAK P
Best Arabidopsis Sequence Match ( AT1G06920.1 )
(BLAST)
001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
Arabidopsis Description
OFP4Transcription repressor OFP4 [Source:UniProtKB/Swiss-Prot;Acc:F4HNU8]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.