Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G284700.1 | Wheat | plastid | 88.99 | 89.38 |
| TraesCS1D01G275100.1 | Wheat | plastid | 89.43 | 88.65 |
| TraesCS1A01G275500.1 | Wheat | nucleus, plastid | 87.22 | 86.46 |
| Os05t0440900-00 | Rice | plastid | 61.23 | 60.17 |
| EES18304 | Sorghum | nucleus, plastid | 59.91 | 59.39 |
| Zm00001d038283_P001 | Maize | nucleus | 57.27 | 57.02 |
| HORVU3Hr1G083700.1 | Barley | plastid | 51.98 | 52.68 |
| GSMUA_Achr6P19470_001 | Banana | nucleus | 34.8 | 42.47 |
| GSMUA_Achr9P02660_001 | Banana | mitochondrion | 29.96 | 34.34 |
| GSMUA_Achr6P18350_001 | Banana | mitochondrion | 29.52 | 31.02 |
| Solyc11g068780.1.1 | Tomato | cytosol | 18.06 | 29.93 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 29.07 | 29.73 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 23.79 | 29.67 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 23.79 | 29.35 |
| KRH32810 | Soybean | mitochondrion | 22.47 | 28.81 |
| PGSC0003DMT400050511 | Potato | cytosol | 17.62 | 28.78 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 22.91 | 27.96 |
| KRH72226 | Soybean | mitochondrion | 21.15 | 27.59 |
| KRH67981 | Soybean | mitochondrion | 22.47 | 26.84 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 21.59 | 26.78 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 20.7 | 26.4 |
| KRG96237 | Soybean | mitochondrion | 22.03 | 26.18 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 21.59 | 25.93 |
| AT3G52525.1 | Thale cress | plastid | 17.62 | 25.16 |
| Bra017266.1-P | Field mustard | nucleus | 20.26 | 24.73 |
| CDX75076 | Canola | nucleus | 20.26 | 24.73 |
| CDY43753 | Canola | nucleus | 20.26 | 24.73 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 19.82 | 24.19 |
| KRH26670 | Soybean | mitochondrion | 18.06 | 22.04 |
| HORVU1Hr1G049440.1 | Barley | mitochondrion | 23.79 | 21.69 |
| KRH22646 | Soybean | mitochondrion, nucleus | 16.74 | 20.65 |
| KRH25295 | Soybean | nucleus, plastid | 17.18 | 20.0 |
| KRH30374 | Soybean | nucleus, plastid | 17.18 | 19.8 |
| HORVU4Hr1G083150.1 | Barley | plastid | 21.15 | 18.97 |
| HORVU3Hr1G055980.1 | Barley | nucleus | 25.11 | 16.96 |
| HORVU2Hr1G093380.1 | Barley | mitochondrion | 17.62 | 15.69 |
| HORVU6Hr1G065900.1 | Barley | mitochondrion, plastid | 19.82 | 15.15 |
| HORVU3Hr1G030870.1 | Barley | nucleus | 23.35 | 14.8 |
| HORVU3Hr1G071640.1 | Barley | nucleus | 15.86 | 12.46 |
| HORVU4Hr1G070860.1 | Barley | cytosol, mitochondrion | 18.06 | 12.2 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 18.5 | 11.7 |
| HORVU3Hr1G081260.2 | Barley | mitochondrion | 19.38 | 11.22 |
| HORVU4Hr1G049960.1 | Barley | mitochondrion | 12.78 | 10.36 |
| HORVU1Hr1G076490.1 | Barley | nucleus | 15.86 | 10.14 |
| HORVU1Hr1G069900.1 | Barley | endoplasmic reticulum, mitochondrion, nucleus, plastid | 17.62 | 9.5 |
Protein Annotations
| EMBL:AK358004 | EnsemblPlants:HORVU1Hr1G074020.1 | EnsemblPlantsGene:HORVU1Hr1G074020 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C |
| PANTHER:PTHR33057 | PANTHER:PTHR33057:SF32 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 |
| UniParc:UPI00020053FC | UniProt:F2D297 | MapMan:15.5.37 | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D297]
Coordinates
chrchr1H:+:506334505..506335612
Molecular Weight (calculated)
24765.1 Da
IEP (calculated)
8.226
GRAVY (calculated)
-0.598
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSPGSCSRR SGDSLLLSRP PPVADVGCGC RTPRVLSSIY SALMSRARGG GSRKPKSSHP SSTSTATAFS SSTTGGTTAT TVSSLDDSWG LATYAANTLY
101: EDDDPEARRQ LRPRRRTRRH RKQRNHGSRR PERGVAMMSR GGEEEEEEEA AVAVEVESAT PYEDFRESMV AMVVEKEMYA WEDLNALLHG FLSLNSPRNH
201: PLILHAFADL WAPRGGLFCP PSPCLGL
101: EDDDPEARRQ LRPRRRTRRH RKQRNHGSRR PERGVAMMSR GGEEEEEEEA AVAVEVESAT PYEDFRESMV AMVVEKEMYA WEDLNALLHG FLSLNSPRNH
201: PLILHAFADL WAPRGGLFCP PSPCLGL
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.