Factsheet for Zm00001d038283_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d027431_P002
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048471_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	Zm00001d027431_P002	AT1G62990.1	15781858
AT3G52525.1	Zm00001d048471_P001	AT1G62990.1	15781858
AT3G52525.1	Zm00001d007842_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d013559_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d018742_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033404_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033859_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033861_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d034212_P001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18304	Sorghum	nucleus, plastid	76.75	76.42
TraesCS1A01G275500.1	Wheat	nucleus, plastid	58.77	58.52
TraesCS1B01G284700.1	Wheat	plastid	57.46	57.96
HORVU1Hr1G074020.1	Barley	nucleus, plastid	57.02	57.27
TraesCS1D01G275100.1	Wheat	plastid	57.02	56.77
Os05t0440900-00	Rice	plastid	55.7	54.98
Zm00001d012282_P001	Maize	nucleus, plastid	49.12	45.34
Zm00001d042752_P001	Maize	nucleus, plastid	47.81	44.31
GSMUA_Achr6P19470_001	Banana	nucleus	35.53	43.55
GSMUA_Achr9P02660_001	Banana	mitochondrion	31.58	36.36
GSMUA_AchrUn_...	Banana	mitochondrion	32.46	33.33
GSMUA_Achr6P18350_001	Banana	mitochondrion	29.82	31.48
Solyc11g068780.1.1	Tomato	cytosol	17.98	29.93
PGSC0003DMT400050511	Potato	cytosol	17.98	29.5
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	23.68	29.03
PGSC0003DMT400042334	Potato	mitochondrion	22.81	28.26
Solyc10g082050.1.1	Tomato	mitochondrion	21.93	28.09
Solyc01g007800.2.1	Tomato	mitochondrion	22.37	28.02
KRH32810	Soybean	mitochondrion	21.49	27.68
KRH67981	Soybean	mitochondrion	22.81	27.37
KRG96237	Soybean	mitochondrion	22.37	26.7
PGSC0003DMT400072347	Potato	mitochondrion, plastid	21.93	26.45
KRH72226	Soybean	mitochondrion	20.18	26.44
AT2G36026.1	Thale cress	nucleus, plastid	20.18	25.14
CDX75076	Canola	nucleus	20.18	24.73
Bra005303.1-P	Field mustard	mitochondrion, plastid	19.74	24.19
Bra017266.1-P	Field mustard	nucleus	19.3	23.66
CDY43753	Canola	nucleus	19.3	23.66
AT3G52525.1	Thale cress	plastid	16.23	23.27
KRH26670	Soybean	mitochondrion	18.86	23.12
KRH22646	Soybean	mitochondrion, nucleus	18.42	22.83
Zm00001d029718_P001	Maize	mitochondrion	22.81	20.0
KRH25295	Soybean	nucleus, plastid	17.11	20.0
KRH30374	Soybean	nucleus, plastid	17.11	19.8
Zm00001d047346_P001	Maize	mitochondrion	22.37	18.55
Zm00001d027453_P001	Maize	plastid	17.98	16.6
Zm00001d017606_P001	Maize	plastid	21.05	16.44
Zm00001d039313_P001	Maize	mitochondrion	24.56	14.85
Zm00001d022446_P001	Maize	nucleus	15.79	14.63
Zm00001d007168_P001	Maize	mitochondrion	14.91	14.59
Zm00001d009993_P001	Maize	nucleus, plastid	16.23	14.29
Zm00001d000458_P001	Maize	mitochondrion, plastid	17.54	13.89
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.25	13.84
Zm00001d037814_P001	Maize	plastid	17.11	13.73
Zm00001d044167_P001	Maize	mitochondrion, nucleus	24.56	13.15
Zm00001d038473_P001	Maize	mitochondrion	20.61	12.84
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	21.49	12.34
Zm00001d012498_P001	Maize	nucleus	19.3	12.19
Zm00001d043046_P001	Maize	peroxisome	18.86	11.68
Zm00001d029067_P001	Maize	mitochondrion	14.04	11.47
Zm00001d038714_P001	Maize	nucleus	15.79	11.43
Zm00001d011410_P001	Maize	nucleus, plastid	19.74	11.28
Zm00001d043470_P001	Maize	mitochondrion, nucleus	16.23	10.95

Protein Annotations

EntrezGene:100282022	MapMan:15.5.37	ProteinID:AIB05268.1	ProteinID:AQK86223.1	UniProt:B6T2M8	EMBL:EU959243
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892
InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057
PANTHER:PTHR33057:SF32	TIGRFAMs:TIGR01568	UniParc:UPI000182C703	EnsemblPlantsGene:Zm00001d038283	EnsemblPlants:Zm00001d038283_P001	EnsemblPlants:Zm00001d038283_T001
SEG:seg	:	:	:	:	:

Description

OVATE-transcription factor 26Plant-specific domain TIGR01568 family protein

Coordinates

chr6:+:153288564..153289250

Molecular Weight (calculated)

24672.8 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.443

Length

228 amino acids

Sequence
(BLAST)

001: MSLAGGGDGC SRRGECGGRL ELPRQQPPMV VDVGCNCRAP RLLSSLISSL KSHARGVGRP NPNSSRHASS SSWSSSATTA FTSSTSLTTA TTTFSSLDHH
101: PSSWVPSTCA ADTNAAVYVV DDDAEPARPA QRRRRRRQRR RGRCGRAATW EEAAVAVEVE SAAPYEDFRD SIVAMVTERE MYAWEDLNAL LHQFLALNSP
201: RHHPLILSAF ADLWAPRGGP FGPPSPCL

Best Arabidopsis Sequence Match ( AT3G52525.1 )
(BLAST)

001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY

Arabidopsis Description

OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.