Factsheet for Zm00001d027453_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d027431_P002
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048471_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	Zm00001d027431_P002	AT1G62990.1	15781858
AT3G52525.1	Zm00001d048471_P001	AT1G62990.1	15781858
AT3G52525.1	Zm00001d007842_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d013559_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d018742_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033404_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033859_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033861_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d034212_P001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92948	Sorghum	plastid	77.33	74.9
TraesCS4D01G316300.1	Wheat	nucleus, plastid	51.01	55.75
TraesCS5A01G492400.1	Wheat	nucleus	49.39	52.36
HORVU4Hr1G083150.1	Barley	plastid	44.13	43.08
TraesCS4B01G319700.1	Wheat	plastid	49.39	40.0
Zm00001d029718_P001	Maize	mitochondrion	38.87	36.92
GSMUA_Achr1P03740_001	Banana	plastid	24.7	35.06
Os03t0126450-00	Rice	nucleus	47.77	35.01
Zm00001d047346_P001	Maize	mitochondrion	36.84	33.09
GSMUA_Achr5P20250_001	Banana	plastid	27.13	32.37
GSMUA_Achr11P...	Banana	plastid	22.27	31.98
Solyc11g068780.1.1	Tomato	cytosol	16.6	29.93
GSMUA_Achr8P12190_001	Banana	plastid	22.67	28.57
Zm00001d017606_P001	Maize	plastid	33.2	28.08
PGSC0003DMT400050511	Potato	cytosol	15.79	28.06
AT3G52525.1	Thale cress	plastid	17.81	27.67
KRH32810	Soybean	mitochondrion	19.43	27.12
KRH26670	Soybean	mitochondrion	19.84	26.34
KRH22646	Soybean	mitochondrion, nucleus	19.03	25.54
KRH72226	Soybean	mitochondrion	17.81	25.29
Solyc10g082050.1.1	Tomato	mitochondrion	17.0	23.6
PGSC0003DMT400072347	Potato	mitochondrion, plastid	17.81	23.28
Bra005303.1-P	Field mustard	mitochondrion, plastid	17.41	23.12
CDX75076	Canola	nucleus	17.41	23.12
KRH67981	Soybean	mitochondrion	17.41	22.63
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	17.0	22.58
Bra017266.1-P	Field mustard	nucleus	17.0	22.58
CDY43753	Canola	nucleus	17.0	22.58
KRG96237	Soybean	mitochondrion	17.41	22.51
AT2G36026.1	Thale cress	nucleus, plastid	16.6	22.4
Solyc01g007800.2.1	Tomato	mitochondrion	16.19	21.98
KRH30374	Soybean	nucleus, plastid	17.41	21.83
PGSC0003DMT400042334	Potato	mitochondrion	16.19	21.74
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.82	21.66
KRH25295	Soybean	nucleus, plastid	17.0	21.54
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.79	21.15
Zm00001d042752_P001	Maize	nucleus, plastid	20.24	20.33
Zm00001d012282_P001	Maize	nucleus, plastid	18.62	18.62
Zm00001d038283_P001	Maize	nucleus	16.6	17.98
Zm00001d022446_P001	Maize	nucleus	14.98	15.04
Zm00001d000458_P001	Maize	mitochondrion, plastid	17.41	14.93
Zm00001d037814_P001	Maize	plastid	17.0	14.79
Zm00001d007168_P001	Maize	mitochondrion	13.77	14.59
Zm00001d009993_P001	Maize	nucleus, plastid	14.98	14.29
Zm00001d038473_P001	Maize	mitochondrion	19.84	13.39
Zm00001d029067_P001	Maize	mitochondrion	14.98	13.26
Zm00001d039313_P001	Maize	mitochondrion	18.62	12.2
Zm00001d038714_P001	Maize	nucleus	15.38	12.06
Zm00001d044167_P001	Maize	mitochondrion, nucleus	20.65	11.97
Zm00001d043470_P001	Maize	mitochondrion, nucleus	16.19	11.83
Zm00001d043046_P001	Maize	peroxisome	17.41	11.68
Zm00001d012498_P001	Maize	nucleus	17.0	11.63
Zm00001d011410_P001	Maize	nucleus, plastid	18.62	11.53

Protein Annotations

EntrezGene:100280487	MapMan:15.5.37	UniProt:B6SH05	EMBL:EU952020	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	ProteinID:ONL93194.1
InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF34
TIGRFAMs:TIGR01568	UniParc:UPI000182B803	EnsemblPlantsGene:Zm00001d027453	EnsemblPlants:Zm00001d027453_P001	EnsemblPlants:Zm00001d027453_T001	SEG:seg

Description

OVATE-transcription factor 1Plant-specific domain TIGR01568 family protein

Coordinates

chr1:-:5589770..5590513

Molecular Weight (calculated)

25834.6 Da

IEP (calculated)

11.404

GRAVY (calculated)

-0.404

Length

247 amino acids

Sequence
(BLAST)

001: MKATTWRGAP GTLPAASAKE KRRKQKTPAP RGLMCGCGST RSVSVDISAA VTTAARTRRR VSTAGEPASA AKTTTTTGCG RGADEASAEG TPSVDSLLRQ
101: LRELERGVRA LGLGVREREE GGGAASGTAT TAETAARPRR HARSASVVER LDYGSVAVVT ESADPLRDFR RSMAQMIVEN GITGGAELRE LLRRFLALNA
201: ACHHHLILRA FGDVWEEIFA AAAAGRDGGR ASKRPRGRAG AGADTLS

Best Arabidopsis Sequence Match ( AT3G52525.1 )
(BLAST)

001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY

Arabidopsis Description

OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.