Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G316300.1 | Wheat | nucleus, plastid | 90.56 | 93.36 |
| HORVU4Hr1G083150.1 | Barley | plastid | 79.83 | 73.52 |
| TraesCS4B01G319700.1 | Wheat | plastid | 89.27 | 68.2 |
| EER92948 | Sorghum | plastid | 55.36 | 50.59 |
| Zm00001d027453_P001 | Maize | plastid | 52.36 | 49.39 |
| TraesCS1A01G185400.1 | Wheat | mitochondrion | 42.49 | 40.24 |
| Os03t0126450-00 | Rice | nucleus | 54.51 | 37.69 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 30.47 | 34.3 |
| GSMUA_Achr11P... | Banana | plastid | 24.03 | 32.56 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 23.61 | 31.61 |
| Solyc11g068780.1.1 | Tomato | cytosol | 17.17 | 29.2 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 24.03 | 28.57 |
| AT3G52525.1 | Thale cress | plastid | 18.45 | 27.04 |
| PGSC0003DMT400050511 | Potato | cytosol | 15.88 | 26.62 |
| TraesCS6A01G258000.1 | Wheat | plastid | 30.04 | 23.97 |
| KRH32810 | Soybean | mitochondrion | 17.6 | 23.16 |
| KRH72226 | Soybean | mitochondrion | 17.17 | 22.99 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 17.17 | 22.47 |
| TraesCS2A01G396600.1 | Wheat | mitochondrion, plastid | 36.48 | 22.43 |
| TraesCS3A01G376000.1 | Wheat | plastid | 21.46 | 22.32 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 17.6 | 22.04 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 16.74 | 20.97 |
| CDX75076 | Canola | nucleus | 16.74 | 20.97 |
| CDY43753 | Canola | nucleus | 16.74 | 20.97 |
| Bra017266.1-P | Field mustard | nucleus | 16.74 | 20.97 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 16.31 | 20.77 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 16.74 | 20.63 |
| KRH67981 | Soybean | mitochondrion | 16.74 | 20.53 |
| KRG96237 | Soybean | mitochondrion | 16.74 | 20.42 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 15.88 | 20.33 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 15.88 | 20.11 |
| KRH26670 | Soybean | mitochondrion | 15.88 | 19.89 |
| TraesCS1A01G275500.1 | Wheat | nucleus, plastid | 19.31 | 19.65 |
| KRH22646 | Soybean | mitochondrion, nucleus | 15.45 | 19.57 |
| KRH30374 | Soybean | nucleus, plastid | 15.45 | 18.27 |
| KRH25295 | Soybean | nucleus, plastid | 15.02 | 17.95 |
| TraesCS4A01G041100.1 | Wheat | mitochondrion | 18.03 | 14.95 |
| TraesCS3A01G289400.1 | Wheat | nucleus | 18.45 | 14.53 |
| TraesCS3A01G228900.1 | Wheat | nucleus | 20.6 | 14.46 |
| TraesCS2A01G392200.1 | Wheat | mitochondrion | 15.02 | 13.62 |
| TraesCS4A01G136100.1 | Wheat | mitochondrion | 15.45 | 12.95 |
| TraesCS2A01G106000.1 | Wheat | nucleus | 14.59 | 12.19 |
| TraesCS3A01G151800.1 | Wheat | nucleus, plastid | 18.45 | 12.18 |
| TraesCS3A01G345100.1 | Wheat | nucleus | 17.6 | 11.33 |
| TraesCS1A01G338100.1 | Wheat | cytosol | 15.45 | 10.5 |
| TraesCS1A01G300100.1 | Wheat | mitochondrion | 16.31 | 10.0 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G492400.1 | EnsemblPlantsGene:TraesCS5A01G492400 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF34 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr5A:+:661221751..661222645
Molecular Weight (calculated)
24440.1 Da
IEP (calculated)
10.271
GRAVY (calculated)
-0.373
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MKATTPRGGG VETAKPKKRK KAGAGGFIFG CGGSKSVAVV ADNLSTMALA KSSSSSSSAA AMAKPAPAAK PTALACQDAE GAPSVDALLG QLRELERGVR
101: ALGVRAREED GVAQACRCSA GPPRHRRDAW GGGRGRLEEE SVAVVTETED PLGEFRRSMA EMVVENGITG GAELRELLQR FLSLNSARHH HLILRAFADV
201: WEELFAGDPT QMLKQKQKRP AVSPAGHSAR ASS
101: ALGVRAREED GVAQACRCSA GPPRHRRDAW GGGRGRLEEE SVAVVTETED PLGEFRRSMA EMVVENGITG GAELRELLQR FLSLNSARHH HLILRAFADV
201: WEELFAGDPT QMLKQKQKRP AVSPAGHSAR ASS
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.