Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G394400.1 | Wheat | mitochondrion | 94.46 | 93.72 |
| TraesCS2B01G415000.1 | Wheat | mitochondrion | 92.35 | 93.58 |
| HORVU2Hr1G094240.1 | Barley | cytosol, mitochondrion, plastid | 74.14 | 78.27 |
| Os04t0577700-01 | Rice | nucleus | 62.8 | 64.85 |
| Zm00001d002594_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 58.05 | 55.42 |
| Zm00001d026061_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 54.88 | 54.31 |
| EES11304 | Sorghum | plastid | 58.58 | 54.28 |
| TraesCS6A01G258000.1 | Wheat | plastid | 39.05 | 50.68 |
| GSMUA_Achr1P03740_001 | Banana | plastid | 22.69 | 49.43 |
| GSMUA_Achr11P... | Banana | plastid | 20.05 | 44.19 |
| GSMUA_Achr5P20250_001 | Banana | plastid | 23.48 | 43.0 |
| TraesCS1A01G185400.1 | Wheat | mitochondrion | 26.91 | 41.46 |
| GSMUA_Achr8P12190_001 | Banana | plastid | 21.11 | 40.82 |
| Solyc11g068780.1.1 | Tomato | cytosol | 13.72 | 37.96 |
| TraesCS5A01G492400.1 | Wheat | nucleus | 22.43 | 36.48 |
| PGSC0003DMT400050511 | Potato | cytosol | 13.19 | 35.97 |
| AT3G52525.1 | Thale cress | plastid | 14.25 | 33.96 |
| KRH22646 | Soybean | mitochondrion, nucleus | 15.83 | 32.61 |
| Solyc10g082050.1.1 | Tomato | mitochondrion | 15.3 | 32.58 |
| KRH26670 | Soybean | mitochondrion | 15.83 | 32.26 |
| KRH32810 | Soybean | mitochondrion | 14.78 | 31.64 |
| KRH72226 | Soybean | mitochondrion | 14.51 | 31.61 |
| PGSC0003DMT400072347 | Potato | mitochondrion, plastid | 15.57 | 31.22 |
| VIT_08s0007g02550.t01 | Wine grape | mitochondrion, plastid | 15.3 | 31.18 |
| KRH67981 | Soybean | mitochondrion | 15.3 | 30.53 |
| KRG96237 | Soybean | mitochondrion | 15.3 | 30.37 |
| Solyc01g007800.2.1 | Tomato | mitochondrion | 14.25 | 29.67 |
| Bra005303.1-P | Field mustard | mitochondrion, plastid | 14.51 | 29.57 |
| CDX75076 | Canola | nucleus | 14.51 | 29.57 |
| PGSC0003DMT400042334 | Potato | mitochondrion | 14.25 | 29.35 |
| Bra017266.1-P | Field mustard | nucleus | 14.25 | 29.03 |
| CDY43753 | Canola | nucleus | 14.25 | 29.03 |
| AT2G36026.1 | Thale cress | nucleus, plastid | 13.98 | 28.96 |
| KRH30374 | Soybean | nucleus, plastid | 13.98 | 26.9 |
| KRH25295 | Soybean | nucleus, plastid | 13.46 | 26.15 |
| TraesCS3A01G376000.1 | Wheat | plastid | 13.98 | 23.66 |
| TraesCS1A01G275500.1 | Wheat | nucleus, plastid | 12.66 | 20.96 |
| TraesCS4A01G041100.1 | Wheat | mitochondrion | 13.46 | 18.15 |
| TraesCS3A01G289400.1 | Wheat | nucleus | 13.98 | 17.91 |
| TraesCS3A01G228900.1 | Wheat | nucleus | 15.04 | 17.17 |
| TraesCS2A01G106000.1 | Wheat | nucleus | 11.87 | 16.13 |
| TraesCS2A01G392200.1 | Wheat | mitochondrion | 10.82 | 15.95 |
| TraesCS3A01G151800.1 | Wheat | nucleus, plastid | 14.25 | 15.3 |
| TraesCS3A01G345100.1 | Wheat | nucleus | 13.98 | 14.64 |
| TraesCS1A01G300100.1 | Wheat | mitochondrion | 14.25 | 14.21 |
| TraesCS4A01G136100.1 | Wheat | mitochondrion | 10.29 | 14.03 |
| TraesCS1A01G338100.1 | Wheat | cytosol | 12.14 | 13.41 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G396600.1 | EnsemblPlantsGene:TraesCS2A01G396600 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045892 | InterPro:IPR006458 | InterPro:Ovate | InterPro:Ovate_C | PANTHER:PTHR33057 |
| PANTHER:PTHR33057:SF6 | PFAM:PF04844 | PFscan:PS51754 | SEG:seg | TIGRFAMs:TIGR01568 | MapMan:15.5.37 |
Description
No Description!
Coordinates
chr2A:-:650259180..650260319
Molecular Weight (calculated)
40694.9 Da
IEP (calculated)
10.903
GRAVY (calculated)
-0.815
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHGVAARKR FGGVGFALGC GCKDPKAVAV AVAASSPRSG TEASTATTAT SRRASRTHPS VSTSTGTLTV PSASSSFLWE DADADADEVE CKRASSATTP
101: SFSGLLRELS ELERSIKSCA RTKSPPRKHF SPPPPPPPPP PPPPPLPSRP VQRRAVRSDD KPSIQEGHGD FSPPRPRPLP PPSVQVPTQQ HRRVKSVDKA
201: SRQEGDAHFT PQPPRPLPPP PPLEPVRSAK AEEDNNKSKS KEDEKRSPTP PPAPKHRKAM SCDSNGNGNG FGGGGGSGRL DGSVAVVKQS EDPLGDFRRS
301: MVNMIVENGI VTGDELRELL RRFLALNAPR HHDAILRAFA EIWDEVFAPA TEPAARPTAP RQRTPPRRRQ PLPPPAWRV
101: SFSGLLRELS ELERSIKSCA RTKSPPRKHF SPPPPPPPPP PPPPPLPSRP VQRRAVRSDD KPSIQEGHGD FSPPRPRPLP PPSVQVPTQQ HRRVKSVDKA
201: SRQEGDAHFT PQPPRPLPPP PPLEPVRSAK AEEDNNKSKS KEDEKRSPTP PPAPKHRKAM SCDSNGNGNG FGGGGGSGRL DGSVAVVKQS EDPLGDFRRS
301: MVNMIVENGI VTGDELRELL RRFLALNAPR HHDAILRAFA EIWDEVFAPA TEPAARPTAP RQRTPPRRRQ PLPPPAWRV
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
Arabidopsis Description
OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.