Factsheet for Zm00001d042752_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007842_P002
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d027431_P002
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d048471_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52525.1	Zm00001d027431_P002	AT1G62990.1	15781858
AT3G52525.1	Zm00001d048471_P001	AT1G62990.1	15781858
AT3G52525.1	Zm00001d007842_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d013559_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d018742_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033404_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033859_P002	AT4G08150.1	15781858
AT3G52525.1	Zm00001d033861_P001	AT4G08150.1	15781858
AT3G52525.1	Zm00001d034212_P001	AT4G08150.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03931	Sorghum	plastid	86.99	90.68
Zm00001d012282_P001	Maize	nucleus, plastid	85.37	85.02
Os01t0864000-01	Rice	mitochondrion, plastid	72.76	78.51
TraesCS3A01G376000.1	Wheat	plastid	69.11	75.89
TraesCS3D01G368500.1	Wheat	plastid	69.11	74.89
HORVU3Hr1G083700.1	Barley	plastid	67.89	74.55
TraesCS3B01G408300.1	Wheat	plastid	67.89	73.89
GSMUA_Achr6P19470_001	Banana	nucleus	38.62	51.08
Zm00001d038283_P001	Maize	nucleus	44.31	47.81
GSMUA_Achr9P02660_001	Banana	mitochondrion	36.18	44.95
GSMUA_Achr6P18350_001	Banana	mitochondrion	34.15	38.89
GSMUA_AchrUn_...	Banana	mitochondrion	34.15	37.84
Solyc11g068780.1.1	Tomato	cytosol	20.73	37.23
PGSC0003DMT400050511	Potato	cytosol	20.33	35.97
Solyc01g007800.2.1	Tomato	mitochondrion	25.61	34.62
VIT_08s0007g02550.t01	Wine grape	mitochondrion, plastid	25.61	33.87
PGSC0003DMT400042334	Potato	mitochondrion	25.2	33.7
Solyc10g082050.1.1	Tomato	mitochondrion	23.58	32.58
KRH67981	Soybean	mitochondrion	24.8	32.11
KRG96237	Soybean	mitochondrion	24.39	31.41
PGSC0003DMT400072347	Potato	mitochondrion, plastid	23.98	31.22
KRH72226	Soybean	mitochondrion	21.95	31.03
KRH32810	Soybean	mitochondrion	21.95	30.51
AT3G52525.1	Thale cress	plastid	19.11	29.56
CDY43753	Canola	nucleus	21.14	27.96
CDX75076	Canola	nucleus	21.14	27.96
Bra017266.1-P	Field mustard	nucleus	21.14	27.96
AT2G36026.1	Thale cress	nucleus, plastid	20.73	27.87
KRH26670	Soybean	mitochondrion	20.73	27.42
Bra005303.1-P	Field mustard	mitochondrion, plastid	20.73	27.42
KRH22646	Soybean	mitochondrion, nucleus	19.51	26.09
KRH30374	Soybean	nucleus, plastid	20.73	25.89
KRH25295	Soybean	nucleus, plastid	20.33	25.64
Zm00001d029718_P001	Maize	mitochondrion	23.17	21.92
Zm00001d047346_P001	Maize	mitochondrion	23.17	20.73
Zm00001d027453_P001	Maize	plastid	20.33	20.24
Zm00001d017606_P001	Maize	plastid	20.73	17.47
Zm00001d009993_P001	Maize	nucleus, plastid	17.89	16.99
Zm00001d022446_P001	Maize	nucleus	16.67	16.67
Zm00001d007168_P001	Maize	mitochondrion	15.45	16.31
Zm00001d039313_P001	Maize	mitochondrion	23.58	15.38
Zm00001d037814_P001	Maize	plastid	17.07	14.79
Zm00001d000458_P001	Maize	mitochondrion, plastid	17.07	14.58
Zm00001d029067_P001	Maize	mitochondrion	16.26	14.34
Zm00001d038473_P001	Maize	mitochondrion	21.14	14.21
Zm00001d002594_P001	Maize	cytosol, mitochondrion, nucleus, plastid	22.76	14.11
Zm00001d026061_P001	Maize	cytosol, mitochondrion, nucleus, plastid	21.95	14.1
Zm00001d044167_P001	Maize	mitochondrion, nucleus	23.98	13.85
Zm00001d012498_P001	Maize	nucleus	19.92	13.57
Zm00001d043046_P001	Maize	peroxisome	19.92	13.32
Zm00001d011410_P001	Maize	nucleus, plastid	21.14	13.03
Zm00001d043470_P001	Maize	mitochondrion, nucleus	17.48	12.72
Zm00001d038714_P001	Maize	nucleus	15.04	11.75

Protein Annotations

EntrezGene:100286179	EntrezGene:107648853	MapMan:15.5.37	UniProt:A0A060D1B6	ncoils:Coil	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458
EMBL:KJ727806	ProteinID:ONM36221.1	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844	PFscan:PS51754
PANTHER:PTHR33057	PANTHER:PTHR33057:SF64	TIGRFAMs:TIGR01568	UniParc:UPI000221AE76	EnsemblPlantsGene:Zm00001d042752	EnsemblPlants:Zm00001d042752_P001
EnsemblPlants:Zm00001d042752_T001	SEG:seg	:	:	:	:

Description

OVATE-transcription factor 14Plant-specific domain TIGR01568 family protein

Coordinates

chr3:+:178900363..178901103

Molecular Weight (calculated)

27170.5 Da

IEP (calculated)

9.649

GRAVY (calculated)

-0.764

Length

246 amino acids

Sequence
(BLAST)

001: MSSGTGTGRS STRRGRGGSF TLRHQPPVVD IGCNCRRPKL FSVFSSSLFR GGGKPKSPNA SSTSTTTAFT ATTAGGRSRS GTTTATSTDS SSWGPASFVA
101: TNSLYEEPVA AAVAPPQERE QQEARRRRRQ QQQRRRRSRR APAPARHGAV AEEEVDGEEQ EQEYGRRVAR ESVAVAVDSA EPYEDFRESM VQMVVEKEIY
201: AWDDLNDLLH QFLSLNSPRH HPLILHAFAD LWTRNGLFCP PSPCQF

Best Arabidopsis Sequence Match ( AT3G52525.1 )
(BLAST)

001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY

Arabidopsis Description

OFP6Transcription repressor OFP6 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAL1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.