CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89055
EER91079
EER92018
EER92948
EER94592
EES03882
EES03931
EES08513
EES11304
EES17536
EES18304
EES18336
KXG20488
KXG24130
KXG31078
KXG35813
KXG38947
KXG40303
KXG40306
OQU81040
OQU82538
OQU84501
OQU85631

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	EES17536	AT1G22630.1	21798944
AT4G08150.1	KXG40306	AT1G62990.1	15781858
AT4G08150.1	EER91079	AT2G16400.1	15781858
AT4G08150.1	KXG24130	AT2G16400.1	15781858
AT4G08150.1	OQU81040	AT2G22680.1	21798944
AT4G08150.1	EER92948	AT3G52525.1	15781858
AT4G08150.1	EER94592	AT3G52525.1	15781858
AT4G08150.1	EES03931	AT3G52525.1	15781858
AT4G08150.1	EES11304	AT3G52525.1	15781858
AT4G08150.1	EES18304	AT3G52525.1	15781858
AT4G08150.1	OQU85631	AT3G52525.1	15781858
AT4G08150.1	KXG35813	AT4G08520.1	21798944
AT4G08150.1	KXG31078	AT4G12450.1	21798944
AT4G08150.1	KXG38947	AT4G12450.1	21798944
AT4G08150.1	EES03882	AT5G02030.1	12897247
AT4G08150.1	EES18336	AT5G02030.1	12897247
AT4G08150.1	EES03882	AT5G02030.1	15019989
AT4G08150.1	EES18336	AT5G02030.1	15019989
AT4G08150.1	EES03882	AT5G02030.1	15781858
AT4G08150.1	EES18336	AT5G02030.1	15781858
AT4G08150.1	KXG20488	AT5G11060.1	15781858
AT4G08150.1	OQU84501	AT5G11060.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	11701881
AT4G08150.1	EER92018	AT5G41410.1	11701881
AT4G08150.1	KXG40303	AT5G41410.1	11701881
AT4G08150.1	EER89055	AT5G41410.1	15781858
AT4G08150.1	EER92018	AT5G41410.1	15781858
AT4G08150.1	KXG40303	AT5G41410.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	17873098
AT4G08150.1	EER92018	AT5G41410.1	17873098
AT4G08150.1	KXG40303	AT5G41410.1	17873098
AT4G08150.1	OQU82538	AT5G50100.1	21798944
AT4G08150.1	EES08513	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033859_P002	Maize	nucleus	92.22	92.48
Os03t0727000-02	Rice	nucleus	81.94	81.72
TraesCS4B01G057900.1	Wheat	nucleus	79.17	78.51
TraesCS4D01G058000.1	Wheat	nucleus	78.89	78.45
TraesCS4A01G256700.1	Wheat	nucleus	78.89	78.45
HORVU4Hr1G009730.1	Barley	nucleus	78.89	78.02
CDY34012	Canola	nucleus	35.83	66.84
GSMUA_Achr7P27540_001	Banana	nucleus	61.39	63.14
GSMUA_Achr3P26230_001	Banana	nucleus	55.56	62.11
GSMUA_Achr4P03120_001	Banana	nucleus	48.33	60.0
VIT_18s0001g08380.t01	Wine grape	nucleus	53.89	52.43
EER95833	Sorghum	nucleus	51.67	52.25
Solyc04g077210.2.1	Tomato	nucleus	51.11	51.83
PGSC0003DMT400012712	Potato	nucleus	51.11	51.11
KRH15482	Soybean	nucleus	53.89	50.39
KRH61471	Soybean	nucleus	50.28	50.14
KRG88661	Soybean	nucleus	53.61	49.87
AT4G08150.1	Thale cress	nucleus	53.61	48.49
Bra000638.1-P	Field mustard	nucleus	51.39	47.8
OQU90921	Sorghum	nucleus	46.11	47.56
CDX83145	Canola	nucleus	51.39	46.02
EER91090	Sorghum	nucleus	40.83	44.01
EES00633	Sorghum	nucleus	35.83	43.88
OQU91064	Sorghum	nucleus	44.72	43.4
EES18954	Sorghum	nucleus	36.11	42.9
CDY68624	Canola	nucleus	38.89	40.11
OQU84501	Sorghum	nucleus	26.94	31.7
KXG20488	Sorghum	nucleus	26.94	30.41
KXG40306	Sorghum	nucleus	22.5	25.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:8060542	UniProt:C5WM19	EnsemblPlants:EER90950	ProteinID:EER90950
ProteinID:EER90950.1	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF203	SMART:SM00389
SMART:SM01188	SMART:SM01255	SMART:SM01256	EnsemblPlantsGene:SORBI_3001G106200	SUPFAM:SSF46689	unigene:Sbi.13097
UniParc:UPI0001A82470	RefSeq:XP_002463952.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:8180004..8187693

Molecular Weight (calculated)

39866.1 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.592

Length

360 amino acids

Sequence
(BLAST)

001: MEEITHHFGV GASSHSHGHG HGQHHHHHHP WASSLSAVVA PPPQQPPTAG LPLTLNTVAA TGNSGASGNP VLQLANGGSL LDACVNVKAK GEPSSSSPYA
101: GDLEAIKAKI ISHPHYYSLL AAYLECKKVG APPDVSARLT AMAQELEARQ RTALSGLGAA TEPELDQFME AYHEMLVKFK EELTRPLQEA MEFMRRVESQ
201: LNSLSISGRS LRNILSSGSS EEDQEGSGGE TELPEVDVHG VDQELKHHLL KKYSGYLSSL KQELSKKKKK GKLPKEARQQ LLSWWDLHYK WPYPSETQKV
301: ALAESTGLDL KQINNWFINQ RKRHWKPSEE MHHLMMDGYH TNTFFMDGHF INDGGLYRLG

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.