CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040611_P002	Maize	nucleus	95.24	94.92
Os01t0302500-01	Rice	nucleus	87.07	85.05
EES18954	Sorghum	nucleus	80.61	78.22
GSMUA_Achr11P...	Banana	nucleus	70.75	67.53
GSMUA_Achr8P10550_001	Banana	nucleus	68.37	65.47
GSMUA_Achr2P00410_001	Banana	nucleus	67.35	64.92
KRH33819	Soybean	nucleus	57.14	56.76
VIT_14s0060g01180.t01	Wine grape	nucleus	59.52	56.45
KRG90534	Soybean	nucleus	56.8	54.4
PGSC0003DMT400007159	Potato	nucleus	56.46	51.55
KRG96717	Soybean	nucleus	53.06	50.16
Solyc01g100510.2.1	Tomato	nucleus	57.14	50.15
KRH68434	Soybean	nucleus	51.7	49.51
EER95833	Sorghum	nucleus	44.9	37.08
EER90950	Sorghum	nucleus	43.88	35.83
EER91090	Sorghum	nucleus	40.14	35.33
OQU90921	Sorghum	nucleus	41.5	34.96
OQU91064	Sorghum	nucleus	42.52	33.69
OQU84501	Sorghum	nucleus	30.61	29.41
KXG20488	Sorghum	nucleus	31.29	28.84
KXG40306	Sorghum	nucleus	26.19	23.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:8060322	UniProt:C5XI60	EnsemblPlants:EES00633	ProteinID:EES00633
ProteinID:EES00633.1	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF115	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	EnsemblPlantsGene:SORBI_3003G144200	SUPFAM:SSF46689	UniParc:UPI0001A84444	RefSeq:XP_002455513.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:14636092..14643061

Molecular Weight (calculated)

32460.2 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.561

Length

294 amino acids

Sequence
(BLAST)

001: MEDLYSIHPG ISRVGGAASE ASVAGVGGPS PSDLTELMKA QIASHPRYPS LLSAYIECRK VGAPPQVASL LEEVSRDRER RPGAGAGEIG VDPELDEFMD
101: SYCRVLVRYK EELSRPFDEA ASFLSSIQAQ LSNLCSAGSS PAATATHSDD MMGSSEDEQC SGDTDVPDIG QEHSSRLADH ELKEMLLKKY SGCLSRLRSE
201: FLKKRKKGKL PKDARTVLLE WWNTHYRWPY PTEEDKVRLA AMTGLDPKQI NNWFINQRKR HWKPSEDMRF ALMEGVAGGS SGTTLYFDTG TIGP

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.