Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00633 | Sorghum | nucleus | 94.92 | 95.24 |
| Os01t0302500-01 | Rice | nucleus | 85.08 | 83.39 |
| Zm00001d035439_P001 | Maize | nucleus | 76.27 | 75.5 |
| Zm00001d010948_P001 | Maize | nucleus | 78.31 | 75.24 |
| GSMUA_Achr11P... | Banana | nucleus | 69.15 | 66.23 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 67.12 | 64.5 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 64.75 | 62.62 |
| KRH33819 | Soybean | nucleus | 55.93 | 55.74 |
| VIT_14s0060g01180.t01 | Wine grape | nucleus | 57.97 | 55.16 |
| KRG90534 | Soybean | nucleus | 55.59 | 53.42 |
| PGSC0003DMT400007159 | Potato | nucleus | 55.59 | 50.93 |
| Solyc01g100510.2.1 | Tomato | nucleus | 56.61 | 49.85 |
| KRG96717 | Soybean | nucleus | 51.53 | 48.87 |
| KRH68434 | Soybean | nucleus | 50.51 | 48.53 |
| Zm00001d018742_P001 | Maize | nucleus | 44.07 | 37.04 |
| Zm00001d033859_P002 | Maize | nucleus | 44.41 | 36.49 |
| Zm00001d007842_P002 | Maize | nucleus | 44.07 | 36.11 |
| Zm00001d033861_P001 | Maize | nucleus | 42.37 | 34.72 |
| Zm00001d033404_P002 | Maize | nucleus | 39.32 | 31.27 |
| Zm00001d013559_P001 | Maize | cytosol, mitochondrion, nucleus | 16.61 | 30.06 |
| Zm00001d046568_P001 | Maize | nucleus | 30.85 | 28.8 |
| Zm00001d053749_P002 | Maize | nucleus | 30.51 | 28.21 |
| Zm00001d015549_P001 | Maize | nucleus | 30.85 | 28.0 |
| Zm00001d034212_P001 | Maize | nucleus | 42.37 | 25.83 |
| Zm00001d027431_P002 | Maize | nucleus | 26.1 | 24.84 |
| Zm00001d048471_P001 | Maize | nucleus | 26.44 | 24.53 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | EntrezGene:542487 | EMBL:AF100455 | InterPro:ELK_dom | UniProt:F1DJR2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EMBL:HQ858670 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 |
| ProteinID:ONM31645.1 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 |
| PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF115 | UniProt:Q9SYT6 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI00000A7C6E | EnsemblPlantsGene:Zm00001d040611 |
| EnsemblPlants:Zm00001d040611_P002 | EnsemblPlants:Zm00001d040611_T002 | SEG:seg | : | : | : |
Description
Homeobox-transcription factor 74Homeobox protein liguleless 3
Coordinates
chr3:+:53767845..53777710
Molecular Weight (calculated)
32495.2 Da
IEP (calculated)
5.602
GRAVY (calculated)
-0.554
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLYSIHPG ISRVVGGAAS EASVAGAGAG GPSPSDLTEL MKAQIASHPR YPSLLSAYIE CRKVGAHPHV TSLLEEVSRE RRPDAGAGEI GVDPELDEFM
101: DAYCRVLVRY KEELTRPFDE AASFLSSIQA QLSDLCSGGS SPAATATHSD DMMGSSEDEQ CSGDTDVPDM GQEHSSHLGD HELKEMLLKK YSGCLSRLRS
201: EFLKKRKKGK LPKDARTVLL EWWNTHYRWP YPTEEDKVRL AAMTGLDPKQ INNWFINQRK RHWKPSEDMR FALMEGVAGG SSGTTLYFDT GTIGP
101: DAYCRVLVRY KEELTRPFDE AASFLSSIQA QLSDLCSGGS SPAATATHSD DMMGSSEDEQ CSGDTDVPDM GQEHSSHLGD HELKEMLLKK YSGCLSRLRS
201: EFLKKRKKGK LPKDARTVLL EWWNTHYRWP YPTEEDKVRL AAMTGLDPKQ INNWFINQRK RHWKPSEDMR FALMEGVAGG SSGTTLYFDT GTIGP
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.