Factsheet for PGSC0003DMT400007159

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100510.2.1	Tomato	nucleus	90.99	87.46
VIT_14s0060g01180.t01	Wine grape	nucleus	59.01	61.29
KRH33819	Soybean	nucleus	54.04	58.78
GSMUA_Achr2P00410_001	Banana	nucleus	53.73	56.72
KRG90534	Soybean	nucleus	54.04	56.68
EES00633	Sorghum	nucleus	51.55	56.46
GSMUA_Achr8P10550_001	Banana	nucleus	53.11	55.7
Zm00001d040611_P002	Maize	nucleus	50.93	55.59
GSMUA_Achr11P...	Banana	nucleus	52.8	55.19
EES18954	Sorghum	nucleus	50.93	54.13
PGSC0003DMT400087440	Potato	nucleus	21.12	53.97
Os01t0302500-01	Rice	nucleus	50.31	53.82
KRH68434	Soybean	nucleus	51.24	53.75
Zm00001d035439_P001	Maize	nucleus	49.38	53.36
Os05t0129700-01	Rice	nucleus	51.24	53.05
Zm00001d010948_P001	Maize	nucleus	50.31	52.77
KRG96717	Soybean	nucleus	50.93	52.73
TraesCS1A01G072800.1	Wheat	nucleus	50.0	52.61
HORVU1Hr1G015720.1	Barley	nucleus	50.0	52.61
TraesCS1D01G075700.1	Wheat	nucleus	50.0	52.61
TraesCS1B01G091700.1	Wheat	nucleus	50.0	52.61
TraesCS1D01G075600.1	Wheat	nucleus	49.07	51.63
TraesCS1B01G091600.1	Wheat	nucleus	47.52	49.84
TraesCS1A01G072700.1	Wheat	nucleus	47.2	49.51
PGSC0003DMT400035095	Potato	nucleus	44.1	41.28
PGSC0003DMT400043083	Potato	nucleus	40.99	38.48
PGSC0003DMT400012712	Potato	nucleus	41.3	36.94
PGSC0003DMT400046618	Potato	nucleus	15.53	30.12
PGSC0003DMT400058528	Potato	nucleus	26.09	26.92
PGSC0003DMT400020407	Potato	nucleus	27.02	25.59
PGSC0003DMT400040351	Potato	nucleus	28.26	24.93
PGSC0003DMT400078990	Potato	nucleus	27.95	21.69

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	ProteinID:ABF50222	ProteinID:ABF50222.1	EMBL:DQ494855	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M0ZSK2
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400002769	PGSC:PGSC0003DMG400002769
EnsemblPlants:PGSC0003DMT400007159	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF102
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000296A0D2
SEG:seg	:	:	:	:	:

Description

Knox [Source:PGSC_GENE;Acc:PGSC0003DMG400002769]

Coordinates

chr1:-:78172451..78176961

Molecular Weight (calculated)

36614.8 Da

IEP (calculated)

5.456

GRAVY (calculated)

-0.800

Length

322 amino acids

Sequence
(BLAST)

001: MDELSKLHSA IVCSRSRQQQ QQAEAEDEAG PTIINNTHTS FPIHHYRQLE AADHQNNTKS STNMSDLIKA QIANHPLYPN LLSAYLQCRK VGAPQGMTSI
101: LEEISNENNL ISSSCHSSEI GADPELDKFM ESYCAVLVKY KEELSKPFDE ATSFLNNIKS QLSSLCKDNL ITSTSFNSNN NYISDEAGGT SEEDLGCEEM
201: EAADSPANRE GDNELKEMLM RKYSGYLSSL RKEFLKKRKK GKLPKEARIV LLDWWNTHYR WPYPTEEEKN RLSEMTGLDQ KQINNWFINQ RKRHWRPSED
301: MKFALMEGVS AGSMYFDGSG GT

Best Arabidopsis Sequence Match ( AT1G70510.1 )
(BLAST)

001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE

Arabidopsis Description

KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.