Factsheet for TraesCS1A01G072800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G015720.1	Barley	nucleus	99.35	99.35
TraesCS1D01G075700.1	Wheat	nucleus	99.02	99.02
TraesCS1B01G091700.1	Wheat	nucleus	98.69	98.69
EES18954	Sorghum	nucleus	85.62	86.47
Os05t0129700-01	Rice	nucleus	86.93	85.53
TraesCS1A01G072700.1	Wheat	nucleus	84.64	84.36
Zm00001d010948_P001	Maize	nucleus	83.66	83.39
Zm00001d035439_P001	Maize	nucleus	81.05	83.22
GSMUA_Achr11P...	Banana	nucleus	67.65	67.21
GSMUA_Achr8P10550_001	Banana	nucleus	67.32	67.1
GSMUA_Achr2P00410_001	Banana	nucleus	65.03	65.25
VIT_14s0060g01180.t01	Wine grape	nucleus	57.19	56.45
KRH33819	Soybean	nucleus	54.25	56.08
KRG90534	Soybean	nucleus	54.58	54.4
KRG96717	Soybean	nucleus	52.94	52.09
KRH68434	Soybean	nucleus	51.96	51.79
PGSC0003DMT400007159	Potato	nucleus	52.61	50.0
Solyc01g100510.2.1	Tomato	nucleus	52.94	48.36
TraesCS2A01G267400.1	Wheat	nucleus	42.81	37.75
TraesCS4A01G292200.1	Wheat	nucleus	38.56	36.99
TraesCS5A01G405900.1	Wheat	nucleus	39.54	36.34
TraesCS4A01G256700.1	Wheat	nucleus	41.5	35.08
TraesCS6A01G145500.1	Wheat	nucleus	31.05	31.05
TraesCS4A01G291900.1	Wheat	nucleus	33.33	31.0
TraesCS4A01G292100.1	Wheat	nucleus	33.33	30.91
TraesCS4A01G292000.1	Wheat	cytosol, nucleus, plastid	14.05	28.29
TraesCS5A01G515000.1	Wheat	nucleus	26.14	25.64
TraesCS4A01G251800.1	Wheat	nucleus	13.4	24.7
TraesCS7A01G511800.2	Wheat	nucleus	30.07	23.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539
InterPro:KNOX1	InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF115	SMART:SM00389
SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS1A01G072800	EnsemblPlants:TraesCS1A01G072800.1
TIGR:cd00086	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:56918365..56923863

Molecular Weight (calculated)

33146.1 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.569

Length

306 amino acids

Sequence
(BLAST)

001: MEDLYSIHPG ISRGGEGGAA CSEASGVAGG ASSPPPPPPP ADLTELMKAQ IAGHPRYPSL LSAYIECRKV GAPPEVAALL EEIGQPERRS GGAAAAGEIG
101: LDPELDEFME AYCRLLSRYK EELSRPLDEA ASFLTTIRSQ LTNLCGGGAT ATSPHSDEMV GSSEDEPCSG DADGSDAGMQ EHSSRLADHE LKEMLLKKYS
201: GCLSRLRSEF LKKRKKGKLP KDARLALMDW WNTHYRWPYP TEEDKVRLAA MTGLDPKQIN NWFINQRKRH WKPSEDMRFA LMEGVTGGGG SSSGTTLYFD
301: TGTIGP

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.