Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112740.1.1 | Tomato | nucleus | 74.7 | 67.39 |
| PGSC0003DMT400035095 | Potato | nucleus | 39.16 | 18.9 |
| KRH63561 | Soybean | nucleus | 30.72 | 18.35 |
| VIT_17s0000g08710.t01 | Wine grape | nucleus | 34.34 | 17.87 |
| PGSC0003DMT400007159 | Potato | nucleus | 30.12 | 15.53 |
| PGSC0003DMT400043083 | Potato | nucleus | 28.92 | 13.99 |
| PGSC0003DMT400012712 | Potato | nucleus | 27.11 | 12.5 |
| PGSC0003DMT400020407 | Potato | nucleus | 18.67 | 9.12 |
| PGSC0003DMT400040351 | Potato | nucleus | 18.07 | 8.22 |
| PGSC0003DMT400078990 | Potato | nucleus | 20.48 | 8.19 |
| PGSC0003DMT400058528 | Potato | nucleus | 14.46 | 7.69 |
| PGSC0003DMT400087440 | Potato | nucleus | 1.2 | 1.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400046618 | EnsemblPlantsGene:PGSC0003DMG400018100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:KNOX1 | InterPro:KNOX2 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF99 | PFAM:PF03790 | PFAM:PF03791 | PGSC:PGSC0003DMG400018100 | SEG:seg |
| SMART:SM01255 | SMART:SM01256 | UniParc:UPI0002969425 | UniProt:M1BJC7 | MapMan:15.5.3.4 | : |
Description
Homeobox 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400018100]
Coordinates
chr3:-:52500416..52502649
Molecular Weight (calculated)
18580.3 Da
IEP (calculated)
3.939
GRAVY (calculated)
-0.416
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MYEFGGYSDD HDFEWPAAEE FSDGSDGNIM SSEVFSVVVD TCSNLQEEDQ KKNIISSHLL YPKLLLTYID CHKVGAPPEI VNMLDKIAQE NDLHRRSSSS
101: STALNQPITD DSELDDFMVT YCDVLAKLKL DLGRSFNEAT TFLNDIQTQL TNLSTTTNTS VDSSEF
101: STALNQPITD DSELDDFMVT YCDVLAKLKL DLGRSFNEAT TFLNDIQTQL TNLSTTTNTS VDSSEF
001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
Arabidopsis Description
KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.