Factsheet for PGSC0003DMT400078990

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007120.2.1	Tomato	nucleus	98.55	94.9
Os08t0292900-01	Rice	nucleus, plasma membrane	42.17	82.94
GSMUA_Achr3P13370_001	Banana	nucleus	61.69	71.71
KRH03552	Soybean	nucleus	57.59	69.28
KRH20116	Soybean	nucleus	57.59	69.08
PGSC0003DMT400040351	Potato	nucleus	60.48	68.77
KRH37876	Soybean	nucleus	60.24	67.75
PGSC0003DMT400020407	Potato	nucleus	55.42	67.65
GSMUA_Achr1P26000_001	Banana	nucleus	60.0	67.48
KRH12889	Soybean	nucleus	59.76	67.03
GSMUA_Achr7P05170_001	Banana	nucleus	62.89	66.41
GSMUA_Achr4P20400_001	Banana	nucleus	60.48	65.36
GSMUA_Achr10P...	Banana	nucleus	60.96	64.54
VIT_11s0118g00800.t01	Wine grape	nucleus	64.1	61.86
PGSC0003DMT400058528	Potato	nucleus	44.82	59.62
PGSC0003DMT400087440	Potato	nucleus	10.84	35.71
PGSC0003DMT400007159	Potato	nucleus	21.69	27.95
PGSC0003DMT400012712	Potato	nucleus	21.45	24.72
PGSC0003DMT400043083	Potato	nucleus	20.24	24.49
PGSC0003DMT400035095	Potato	nucleus	20.0	24.13
PGSC0003DMT400046618	Potato	nucleus	8.19	20.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
UniProt:M1D128	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400030737
PGSC:PGSC0003DMG400030737	EnsemblPlants:PGSC0003DMT400078990	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI0002949ED5
SEG:seg	:	:	:	:	:

Description

Homeobox protein knotted-1-like LET12 [Source:PGSC_GENE;Acc:PGSC0003DMG400030737]

Coordinates

chr7:+:3061667..3068336

Molecular Weight (calculated)

45983.3 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.858

Length

415 amino acids

Sequence
(BLAST)

001: MALHQQQQQQ QQQQNAVLRS MLPESPHHDV RKSPPTWLNT SLLRQQHSQF ANASSPSSAA AAAAVAGGNN FLHLQTSNSD SSNSNQWLSP TAAAGGGGGV
101: TGGGGGHNDE LSESMNFAKK MSQQHSGGGE ENNNNNNEEE NSWEREKCKA DILNHPLYDQ LLSAHVSCLR IATPVDQLPR IDAQLAQSQN VVAKYSVLGQ
201: GQPPLDDKDL DQFMTHYVLL LSSFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVAPGE GTGATMSDDD DDQADSDTNF LDGGFDGPDS MGFGPLVPTE
301: SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS
401: SSQKSKRKSA GEIKQ

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.