Factsheet for VIT_11s0118g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0292900-01	Rice	nucleus, plasma membrane	42.56	86.73
GSMUA_Achr3P13370_001	Banana	nucleus	63.49	76.47
KRH03552	Soybean	nucleus	60.0	74.78
KRH20116	Soybean	nucleus	59.77	74.28
GSMUA_Achr7P05170_001	Banana	nucleus	66.51	72.77
VIT_04s0008g06130.t01	Wine grape	nucleus	71.16	71.66
GSMUA_Achr1P26000_001	Banana	nucleus	61.16	71.27
KRH12889	Soybean	nucleus	61.16	71.08
GSMUA_Achr4P20400_001	Banana	nucleus	63.26	70.83
KRH37876	Soybean	nucleus	60.7	70.73
GSMUA_Achr10P...	Banana	nucleus	61.4	67.35
Solyc12g010410.1.1	Tomato	nucleus	51.16	66.87
PGSC0003DMT400020407	Potato	nucleus	51.16	64.71
VIT_02s0025g04630.t01	Wine grape	nucleus	43.49	64.26
PGSC0003DMT400078990	Potato	nucleus	61.86	64.1
Solyc07g007120.2.1	Tomato	nucleus	62.33	62.18
VIT_17s0000g08710.t01	Wine grape	nucleus	21.86	29.47
VIT_14s0060g01180.t01	Wine grape	nucleus	20.93	29.03
VIT_01s0127g00210.t01	Wine grape	nucleus	20.7	27.99
VIT_18s0001g08380.t01	Wine grape	nucleus	22.56	26.22
VIT_10s0116g00190.t01	Wine grape	nucleus	19.53	24.0
VIT_12s0059g01190.t01	Wine grape	nucleus	20.0	23.82
VIT_15s0021g01750.t01	Wine grape	nucleus	10.7	20.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246520	wikigene:100246520	MapMan:15.5.3.4	ProteinID:CCB49936	ProteinID:CCB49936.1
InterPro:ELK_dom	UniProt:F6HCJ0	EMBL:FN595515	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
EntrezGene:LOC100246520	wikigene:LOC100246520	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	TIGR:TC68566	UniParc:UPI00015CCA04	ArrayExpress:VIT_11s0118g00800
EnsemblPlantsGene:VIT_11s0118g00800	EnsemblPlants:VIT_11s0118g00800.t01	unigene:Vvi.20985	unigene:Vvi.7113	RefSeq:XP_002265494	RefSeq:XP_002265494.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:6584483..6590548

Molecular Weight (calculated)

47549.4 Da

IEP (calculated)

5.851

GRAVY (calculated)

-0.707

Length

430 amino acids

Sequence
(BLAST)

001: MAFHNQLSHD MALQHFTDSH LTENTAVLRG ILPEQLGQSS SDGAGKPPSH QQLGGGGGGG GPTWLNNAIL RQQSQYADGS FLHLQTNSDS TSSPATATTT
101: TNQWLSRSMS NVGAQNDDVP VSSGSVIAAI SADLNGNQEK RNGGNNQNRG DNNGEDMLDC DSGGNWENAR YKADILAHPL YEQLLSAHVS CLRIATPVDQ
201: LPRIDAQLAQ SQGVVTKYSV LANQPLDDKE LDQFMTHYVL LLCSFKEQLQ QHVRVHAMEA VMACWELEQS LQSLTGVSPG EGTGATMSDD EDDQADSEIN
301: LFDGSLDGPD SMGFGPLVPT ETERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSLL KAWWQSHSKW PYPTEEDKAR LVQETGLHLK
401: QINNWFINQR KRNWHSNPSS SAVLKTKRKR

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.