Factsheet for GSMUA_Achr1P26000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13370_001	Banana	nucleus	77.51	80.11
GSMUA_Achr4P20400_001	Banana	nucleus	80.76	77.6
GSMUA_Achr7P05170_001	Banana	nucleus	79.67	74.81
GSMUA_Achr10P...	Banana	nucleus	71.0	66.84
KRH03552	Soybean	nucleus	61.25	65.51
KRH20116	Soybean	nucleus	61.25	65.32
GSMUA_Achr5P04420_001	Banana	nucleus	44.17	64.94
KRH12889	Soybean	nucleus	63.69	63.51
KRH37876	Soybean	nucleus	63.41	63.41
Solyc12g010410.1.1	Tomato	nucleus	56.37	63.22
GSMUA_Achr1P03660_001	Banana	nucleus	48.24	61.17
VIT_11s0118g00800.t01	Wine grape	nucleus	71.27	61.16
PGSC0003DMT400020407	Potato	nucleus	56.1	60.88
PGSC0003DMT400078990	Potato	nucleus	67.48	60.0
Solyc07g007120.2.1	Tomato	nucleus	67.21	57.54
GSMUA_Achr5P01960_001	Banana	nucleus	16.26	31.25
GSMUA_Achr8P10550_001	Banana	nucleus	25.47	30.62
GSMUA_Achr4P28270_001	Banana	nucleus	22.22	30.26
GSMUA_Achr7P08050_001	Banana	nucleus	21.68	30.08
GSMUA_Achr10P...	Banana	nucleus	20.87	29.62
GSMUA_Achr11P...	Banana	nucleus	24.66	29.55
GSMUA_Achr2P00410_001	Banana	nucleus	24.12	29.18
GSMUA_Achr4P03120_001	Banana	nucleus	21.68	27.59
GSMUA_Achr7P27540_001	Banana	nucleus	26.02	27.43
GSMUA_Achr3P26230_001	Banana	nucleus	23.04	26.4
GSMUA_Achr4P32230_001	Banana	nucleus	24.12	25.8
GSMUA_Achr2P13200_001	Banana	nucleus	23.31	24.5
GSMUA_Achr6P04640_001	Banana	nucleus	22.22	22.97
GSMUA_Achr4P14600_001	Banana	nucleus	23.58	22.42
GSMUA_Achr8P05110_001	Banana	nucleus	16.8	20.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G26000_001
EnsemblPlants:GSMUA_Achr1P26000_001	EnsemblPlants:GSMUA_Achr1T26000_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M0S357	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00029666B0
SEG:seg	:	:	:	:	:

Description

Homeobox protein knotted-1-like 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26000_001]

Coordinates

chr1:+:20594994..20599452

Molecular Weight (calculated)

40673.5 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.676

Length

369 amino acids

Sequence
(BLAST)

001: MAGGGGPTWL NSAILRQQGH HYADRSFLHL QTTSGSSASP DEVPVSNDPI MAGATSGEHG GRRGHAGGEL GESEAVAQGS GGETAAGEVT WMNARYKAEI
101: LAHPLCEQLL AAHVACLRIA TPVDQLPRID AQLGQSQQIV SKYSVLGNNG QMPGDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWELEQSLQ
201: SLTGVSPGEG TGATMSDDDD DDGDDDDDQV DSETNLFDGP DSMGFGPLIP TETERSLMER VRQELKHELK QGYKNKIVDI REEILRKRRA GKLPGNSTCT
301: LKAWWQSHSK WPYPTEDDKA RLVEETGLQL KQINNWFINQ RKRNWHSNPS SSSSSSLKSK RKRFAMCTT

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.