CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89055
EER91079
EER92018
EER92948
EER94592
EES03882
EES03931
EES08513
EES11304
EES17536
EES18304
EES18336
KXG20488
KXG24130
KXG31078
KXG35813
KXG38947
KXG40303
KXG40306
OQU81040
OQU82538
OQU84501
OQU85631

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08150.1	EES17536	AT1G22630.1	21798944
AT4G08150.1	KXG40306	AT1G62990.1	15781858
AT4G08150.1	EER91079	AT2G16400.1	15781858
AT4G08150.1	KXG24130	AT2G16400.1	15781858
AT4G08150.1	OQU81040	AT2G22680.1	21798944
AT4G08150.1	EER92948	AT3G52525.1	15781858
AT4G08150.1	EER94592	AT3G52525.1	15781858
AT4G08150.1	EES03931	AT3G52525.1	15781858
AT4G08150.1	EES11304	AT3G52525.1	15781858
AT4G08150.1	EES18304	AT3G52525.1	15781858
AT4G08150.1	OQU85631	AT3G52525.1	15781858
AT4G08150.1	KXG35813	AT4G08520.1	21798944
AT4G08150.1	KXG31078	AT4G12450.1	21798944
AT4G08150.1	KXG38947	AT4G12450.1	21798944
AT4G08150.1	EES03882	AT5G02030.1	12897247
AT4G08150.1	EES18336	AT5G02030.1	12897247
AT4G08150.1	EES03882	AT5G02030.1	15019989
AT4G08150.1	EES18336	AT5G02030.1	15019989
AT4G08150.1	EES03882	AT5G02030.1	15781858
AT4G08150.1	EES18336	AT5G02030.1	15781858
AT4G08150.1	KXG20488	AT5G11060.1	15781858
AT4G08150.1	OQU84501	AT5G11060.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	11701881
AT4G08150.1	EER92018	AT5G41410.1	11701881
AT4G08150.1	KXG40303	AT5G41410.1	11701881
AT4G08150.1	EER89055	AT5G41410.1	15781858
AT4G08150.1	EER92018	AT5G41410.1	15781858
AT4G08150.1	KXG40303	AT5G41410.1	15781858
AT4G08150.1	EER89055	AT5G41410.1	17873098
AT4G08150.1	EER92018	AT5G41410.1	17873098
AT4G08150.1	KXG40303	AT5G41410.1	17873098
AT4G08150.1	OQU82538	AT5G50100.1	21798944
AT4G08150.1	EES08513	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018742_P001	Maize	nucleus	89.04	90.31
Zm00001d007842_P002	Maize	nucleus	87.64	86.67
Os07t0129700-01	Rice	nucleus	83.99	84.23
TraesCS2A01G267400.1	Wheat	nucleus	81.74	83.86
TraesCS2D01G256400.1	Wheat	nucleus	81.46	83.57
TraesCS2B01G268200.1	Wheat	nucleus	81.46	83.57
HORVU2Hr1G061320.3	Barley	nucleus, plastid	80.62	80.17
CDY34012	Canola	nucleus	38.76	71.5
OQU90921	Sorghum	nucleus	62.36	63.61
GSMUA_Achr10P...	Banana	nucleus	43.26	59.23
VIT_18s0001g08380.t01	Wine grape	nucleus	56.18	54.05
Solyc04g077210.2.1	Tomato	nucleus	53.65	53.8
PGSC0003DMT400012712	Potato	nucleus	53.09	52.5
EER90950	Sorghum	nucleus	52.25	51.67
KRH15482	Soybean	nucleus	55.62	51.43
KRH61471	Soybean	nucleus	51.97	51.25
Bra000638.1-P	Field mustard	nucleus	55.62	51.16
KRG88661	Soybean	nucleus	55.62	51.16
AT4G08150.1	Thale cress	nucleus	55.34	49.5
CDX83145	Canola	nucleus	55.62	49.25
EER91090	Sorghum	nucleus	44.66	47.6
EES00633	Sorghum	nucleus	37.08	44.9
EES18954	Sorghum	nucleus	38.2	44.88
OQU91064	Sorghum	nucleus	46.35	44.47
CDY68624	Canola	nucleus	41.85	42.69
OQU84501	Sorghum	nucleus	25.28	29.41
KXG20488	Sorghum	nucleus	25.56	28.53
KXG40306	Sorghum	nucleus	22.75	25.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:8059916	UniProt:C5X8S7	EnsemblPlants:EER95833	ProteinID:EER95833
ProteinID:EER95833.1	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF203	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	EnsemblPlantsGene:SORBI_3002G023900	SUPFAM:SSF46689	unigene:Sbi.333	UniParc:UPI0001A82E32
RefSeq:XP_002459312.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:2228532..2234882

Molecular Weight (calculated)

38886.7 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.644

Length

356 amino acids

Sequence
(BLAST)

001: MDQSFGNLGA GAGGGSSSGG SNSKAAVSSS SFLQLPLSTA SPAYYGAPLA LLHHHAAAVA AGGPGPSSSQ QQQSPYATKH ASTAEMSSAE AEAIKAKIVA
101: HPQYSALLAA YLDCQKVGAP PDVLERLTAM AAKLDARPPG RHEPRDPELD QFMEAYCNML VKYREELTRP IDEAMEFLKR VEAQLDSISG GGGSSSSARL
201: SLTDGKSEGV GSSEDDMDPS GRENDPPEID PRAEDKELKY QLLKKYSGYL SSLRQEFSKK KKKGKLPKEA RQKLLHWWEL HYKWPYPSET EKIALAESTG
301: LDQKQINNWF INQRKRHWKP SEDMPFVMME GFHPQNAAAL YMDGPFMADG MYRLGS

Best Arabidopsis Sequence Match ( AT4G08150.1 )
(BLAST)

001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP

Arabidopsis Description

KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.