Factsheet for VIT_06s0004g02580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27990.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G27990.1	VIT_18s0001g08380.t01	AT4G08150.1	15781858
AT2G27990.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	15.87	45.25
KRH22860	Soybean	nucleus	44.4	42.37
KRH26495	Soybean	nucleus	44.53	42.07
PGSC0003DMT400020825	Potato	nucleus	38.8	42.05
KRH25064	Soybean	nucleus	41.07	40.53
Solyc11g069890.1.1	Tomato	golgi	31.07	40.17
KRH30618	Soybean	nucleus	40.67	39.71
GSMUA_Achr10P...	Banana	nucleus	33.47	33.29
AT2G27990.1	Thale cress	nucleus	24.93	32.02
VIT_13s0019g02450.t01	Wine grape	nucleus	20.53	30.92
VIT_18s0001g11800.t01	Wine grape	nucleus	14.13	30.37
VIT_18s0001g13130.t01	Wine grape	nucleus	18.67	29.79
VIT_08s0007g01290.t01	Wine grape	nucleus	24.93	29.13
VIT_02s0025g00200.t01	Wine grape	nucleus	23.2	26.93
VIT_03s0038g00050.t01	Wine grape	nucleus	23.47	25.47
VIT_08s0105g00230.t01	Wine grape	nucleus	20.4	24.52
VIT_06s0009g00410.t01	Wine grape	nucleus	23.6	24.31
VIT_04s0023g01020.t01	Wine grape	nucleus	26.67	23.64
VIT_18s0001g13150.t01	Wine grape	nucleus	20.93	22.49
VIT_04s0008g00880.t01	Wine grape	nucleus	16.8	21.39

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100255350	wikigene:100255350	MapMan:15.5.3.5	ProteinID:CCB43685	ProteinID:CCB43685.1
UniProt:F6GU21	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100255350	wikigene:LOC100255350	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF125	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI00021080AE	ArrayExpress:VIT_06s0004g02580	EnsemblPlantsGene:VIT_06s0004g02580	EnsemblPlants:VIT_06s0004g02580.t01	RefSeq:XP_002282519
RefSeq:XP_002282519.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:3099564..3107370

Molecular Weight (calculated)

82287.0 Da

IEP (calculated)

7.382

GRAVY (calculated)

-0.542

Length

750 amino acids

Sequence
(BLAST)

001: MRNFRPESHV AQQSRRDKLR VQHQSSTPAH HLEEFPNSLE QLSVHPELNP DLIQVRNVRN GNVLYDPIVL SSEMLNFSSN SHVFLGSKDA MVGQDSNAVS
101: QDASFPNLSH PISSKAAGDP QNCDNWKGLG TQQSCDWIVN YANGTVASES NQNPMYVGEV LSASSMKVNN ISASSLDLKP NYSGYQDVQS SITNPSSEIS
201: SQDSQKHYGE IHFNSPQLYR NTLQEVVTSA AVGTQGLEMA SFAHQNIRDT GRDSWEDGGN ELVLLPNFGN QSSALRLDSS VAWMTRPVEG CHQWSGGDLG
301: VLANKSLGDL STIASDSNAQ GLSLSLSSHP SSKIQVAQFG ERYESKDLRS GTAAFSCPQD LKVMSSGYLC SDSKPPVSGK GYGNSLHDIV GTSTYTHRSA
401: GPLGPFTGYA TILKSSKFLK PAQQVLDEFC KAASPKLVKT CEVTRRTSGD VSVSVPDAVN TSDTEVGAAK GGNSAVSSST FYDSNEISEG GVKSSSCESY
501: RPDYQQKKAK LLFMQEEVCR RYKQYHQQMQ MVVSSFETVA GLSAATPYIA LALKTVSRHF RFLKNAISDQ LRHIRKALGE DLSSPSTGAC TSAGDASSPR
601: LKFMNQSFPK HKPGGANLGF LEPQQHVWRP QRGLPERAVA ILRAWLFEHF LHPYPTDTDK HMLATQTGLS RNQVSNWFIN ARVRVWKPMV EEVHMLETKG
701: LAERDQNSGK KDWKSIGEGQ APEMNWVLSS GIKRSDQEWS AKFLEAWTGH

Best Arabidopsis Sequence Match ( AT2G27990.1 )
(BLAST)

001: MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY
101: DQAGIRPNNV ADLLSDHFSS RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS GSYRGEFSFL PSLENQSVAH
201: NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD
301: DDDDNLSGFS SSSEPLEPKN RLKKAKLLFL QEEVCKWYKL YNHQLQTVMS SFNTVAGLNT ATPYISLALK RTSRSFKALR TAIAEHVKQI SSHSSNGNNN
401: NRFQKRQRSL IGNNVGFESQ QQHIWRPQRG LPERAVAVLR AWLFDHFLHP YPTDSDKQML ATQTGLSRNQ VSNWFINARV RLWKPMVEEI HTLETKAIKN
501: ADTSHNIEPS NRPNTVSSPS HEQTLTGLSG TKRSRLEYMD MVGFNRGNVS LTLELRRGVD NVIQTQTQDH QFGTGSQMFH DFVG

Arabidopsis Description

BLH8BEL1-like homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.