Factsheet for VIT_18s0001g11800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P14670_001	Banana	nucleus	49.57	58.25
Bra010577.1-P	Field mustard	nucleus	54.44	57.75
Bra011713.1-P	Field mustard	nucleus	56.16	57.48
GSMUA_Achr4P07450_001	Banana	nucleus	49.28	56.77
GSMUA_Achr5P08840_001	Banana	nucleus	50.72	55.84
GSMUA_Achr1P26900_001	Banana	nucleus	50.14	43.97
CDX75604	Canola	nucleus	58.17	30.34
CDX69252	Canola	nucleus	57.88	30.28
CDY22463	Canola	nucleus	56.45	29.4
CDY24765	Canola	nucleus	55.59	29.09
Solyc04g079830.2.1	Tomato	nucleus	57.02	28.76
VIT_04s0023g01020.t01	Wine grape	nucleus	67.62	27.9
GSMUA_Achr7P27440_001	Banana	nucleus	53.3	27.19
AT4G36870.2	Thale cress	nucleus	57.31	27.06
TraesCS4B01G063100.1	Wheat	nucleus, plastid	53.58	25.24
EER93512	Sorghum	nucleus, plastid	54.44	24.68
Zm00001d033898_P002	Maize	nucleus	53.01	24.5
TraesCS4A01G252100.2	Wheat	nucleus	53.87	24.38
Os03t0732100-01	Rice	nucleus	53.3	23.54
TraesCS4D01G062100.1	Wheat	nucleus	53.87	23.41
HORVU4Hr1G010430.6	Barley	nucleus	53.87	23.24
VIT_02s0025g00200.t01	Wine grape	nucleus	42.41	22.91
VIT_18s0001g13130.t01	Wine grape	nucleus	28.08	20.85
VIT_08s0105g00230.t01	Wine grape	nucleus	37.25	20.83
VIT_13s0019g02450.t01	Wine grape	nucleus	29.51	20.68
VIT_03s0038g00050.t01	Wine grape	nucleus	38.97	19.68
VIT_06s0009g00410.t01	Wine grape	nucleus	39.54	18.96
VIT_08s0007g01290.t01	Wine grape	nucleus	34.1	18.54
VIT_18s0001g13150.t01	Wine grape	nucleus	36.96	18.48
VIT_06s0004g02580.t01	Wine grape	nucleus	30.37	14.13
VIT_04s0008g00880.t01	Wine grape	nucleus	20.92	12.39

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243714	wikigene:100243714	MapMan:15.5.3.5	ProteinID:CBI19630	ProteinID:CBI19630.3
UniProt:E0CPY4	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009965
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100243714
wikigene:LOC100243714	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	TIGR:TC58702	UniParc:UPI0001BE1A77
ArrayExpress:VIT_18s0001g11800	EnsemblPlantsGene:VIT_18s0001g11800	EnsemblPlants:VIT_18s0001g11800.t01	RefSeq:XP_002281889	RefSeq:XP_002281889.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:10068405..10074526

Molecular Weight (calculated)

38929.9 Da

IEP (calculated)

8.150

GRAVY (calculated)

-0.606

Length

349 amino acids

Sequence
(BLAST)

001: MLDEARPTGW KLLGNPMISI IVDSRYNHYC EQIQVVVNSF DSKMGFGAAN PYTTLARKAM SRHFRCMKDA ILAQLKISCE LLGEKDVMAA SGLSKGETPR
101: LRLLDQSLRQ QRALHQMGMM EPEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL SRQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQDAKEEEA
201: AASSEDREAN PQNHQKNSIS AQTPRSSTPP ASQRSQINAQ ENDPSLDTIN YRNCFSGTQA ITQATTTTTT TTTTISQRFP TTHEAGMHQR TVAADDTWCR
301: GSVFGGEYGT TDAASLGTPA GDVSLTLGLR HAGNLPDKGR LSLRDFGAC

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.