Factsheet for VIT_04s0008g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04630.t01
VIT_06s0004g07910.t01
VIT_10s0116g00190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	VIT_10s0116g00190.t01	AT1G62360.1	15781858
AT4G32980.1	VIT_10s0116g00190.t01	AT1G62360.1	16513846
AT4G32980.1	VIT_10s0116g00190.t01	AT1G62360.1	17785527
AT4G32980.1	VIT_02s0025g04630.t01	AT1G62990.1	15781858
AT4G32980.1	VIT_06s0004g07910.t01	AT5G01840.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75307	Canola	nucleus	23.77	63.06
PGSC0003DMT400076995	Potato	nucleus	48.56	52.96
Solyc08g065420.2.1	Tomato	nucleus	49.92	52.59
KRH52190	Soybean	nucleus	47.88	51.37
KRH61499	Soybean	nucleus	49.24	50.43
KRH05496	Soybean	nucleus	47.71	49.21
Bra011403.1-P	Field mustard	nucleus	36.33	45.92
CDX75313	Canola	nucleus	36.33	45.92
CDY13511	Canola	nucleus	33.96	45.77
CDX68927	Canola	nucleus	35.65	45.55
Bra037031.1-P	Field mustard	nucleus	33.79	45.54
AT4G32980.1	Thale cress	nucleus	35.99	44.82
CDX72383	Canola	nucleus	33.96	44.25
CDX68925	Canola	cytosol	12.39	40.33
GSMUA_Achr4P02680_001	Banana	nucleus	34.47	35.06
CDX68906	Canola	nucleus	13.92	31.66
Zm00001d046223_P006	Maize	nucleus	26.15	31.36
KXG20197	Sorghum	nucleus	25.98	30.97
TraesCS7A01G358300.1	Wheat	nucleus	28.69	30.56
TraesCS7D01G364500.1	Wheat	nucleus	28.35	30.36
TraesCS7B01G269400.1	Wheat	nucleus	28.35	30.25
Os06t0562300-00	Rice	nucleus	26.83	28.99
Os02t0226600-01	Rice	nucleus	25.64	28.01
HORVU7Hr1G088090.4	Barley	nucleus	25.64	27.26
Zm00001d016298_P001	Maize	nucleus	25.13	27.01
EES04785	Sorghum	nucleus	25.47	26.6
Zm00001d002249_P001	Maize	nucleus	14.94	25.0
VIT_18s0001g13130.t01	Wine grape	nucleus	19.35	24.26
VIT_18s0001g11800.t01	Wine grape	nucleus	12.39	20.92
VIT_13s0019g02450.t01	Wine grape	nucleus	17.32	20.48
VIT_02s0025g00200.t01	Wine grape	nucleus	21.56	19.66
VIT_03s0038g00050.t01	Wine grape	nucleus	22.92	19.54
VIT_06s0009g00410.t01	Wine grape	nucleus	23.43	18.96
VIT_08s0105g00230.t01	Wine grape	nucleus	20.03	18.91
VIT_18s0001g13150.t01	Wine grape	nucleus	20.54	17.34
VIT_08s0007g01290.t01	Wine grape	nucleus	18.68	17.13
VIT_06s0004g02580.t01	Wine grape	nucleus	21.39	16.8
VIT_04s0023g01020.t01	Wine grape	nucleus	21.05	14.66

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100249241	wikigene:100249241	MapMan:15.5.3.5	ProteinID:CCB46551	ProteinID:CCB46551.1
UniProt:F6H395	EMBL:FN595231	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008285
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009653	GO:GO:0009791	GO:GO:0009838
GO:GO:0009908	GO:GO:0009987	GO:GO:0010227	GO:GO:0010228	GO:GO:0010371	GO:GO:0019748
GO:GO:0043565	GO:GO:0090470	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EntrezGene:LOC100249241	wikigene:LOC100249241	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071
PANTHER:PTHR11850	PANTHER:PTHR11850:SF92	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI00015C8954
ArrayExpress:VIT_04s0008g00880	EnsemblPlantsGene:VIT_04s0008g00880	EnsemblPlants:VIT_04s0008g00880.t01	RefSeq:XP_002278796	RefSeq:XP_002278796.2	SEG:seg

Description

No Description!

Coordinates

chr4:-:747055..750076

Molecular Weight (calculated)

65687.4 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.432

Length

589 amino acids

Sequence
(BLAST)

001: MENDMFNVPM DIAGRNHVVM DGVSSHMSTN SLIQSDLFHL NSQNQFMIGL PVLPMLQGET INGLHADFQM TSRPAIVDSD ELVSRNSSLG QACPIGSTNG
101: QEQFNEVTTI SASSLATLLA TKSGLHENLD NLAISATSVF PSEDLRTFVS SDCSNTSNSS LATSVDCPYD GVLSDMTRKW GFDKFLPSPE LTGKTTLRTG
201: FQPFHIIGDM DPNGWISSSA DTRTVPPYGS SNELSLSLAT SQPSVMCGAT APNQCSERSC SGVTHPCLNE VGLGSEQGSC NSKELSLSFG SYRPAQFSQV
301: ISGSRYLHVI QEILAEILNY SLENLDHSIY STTRTGGQAN VQLSSGYAAQ RGLSVMGSDE FPDEDGRYAV PMDPVLQKRE VEAKKTQLLA LLQVVDDQYN
401: QCLDEIHTVI SAFHAATELD PQIHARFALH TISLLYKNLR ERISNQILAM GTRFTNGCTS EKERPPFESS FIQKQWDLQQ LRRKDHQLWR PQRGLPERSV
501: SVLRAWMFQN FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI NARVRLWKPM IEEMYSEMNR RKGRRNDEES NNSNRRSTIS MDNQRYKII

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.