Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75307 | Canola | nucleus | 39.75 | 84.68 |
| CDX68927 | Canola | nucleus | 76.32 | 78.31 |
| CDY13511 | Canola | nucleus | 72.09 | 78.03 |
| Bra037031.1-P | Field mustard | nucleus | 71.88 | 77.8 |
| Bra011403.1-P | Field mustard | nucleus | 76.32 | 77.47 |
| CDX75313 | Canola | nucleus | 76.32 | 77.47 |
| CDX72383 | Canola | nucleus | 73.36 | 76.77 |
| CDX68906 | Canola | nucleus | 38.27 | 69.88 |
| CDX68925 | Canola | cytosol | 19.87 | 51.93 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 44.82 | 35.99 |
| PGSC0003DMT400076995 | Potato | nucleus | 39.53 | 34.63 |
| KRH52190 | Soybean | nucleus | 40.17 | 34.61 |
| KRH05496 | Soybean | nucleus | 41.65 | 34.5 |
| KRH61499 | Soybean | nucleus | 41.01 | 33.74 |
| Solyc08g065420.2.1 | Tomato | nucleus | 39.32 | 33.27 |
| AT1G75430.1 | Thale cress | nucleus | 17.76 | 28.97 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 32.77 | 26.77 |
| Zm00001d046223_P006 | Maize | nucleus | 25.16 | 24.24 |
| Os02t0226600-01 | Rice | nucleus | 26.85 | 23.56 |
| KXG20197 | Sorghum | nucleus | 24.52 | 23.48 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 27.06 | 23.19 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 27.06 | 23.15 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 26.85 | 23.09 |
| Os06t0562300-00 | Rice | nucleus | 26.22 | 22.75 |
| Zm00001d016298_P001 | Maize | nucleus | 25.58 | 22.08 |
| EES04785 | Sorghum | nucleus | 25.58 | 21.45 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 23.89 | 20.4 |
| AT2G27220.2 | Thale cress | nucleus | 18.82 | 19.82 |
| AT2G16400.1 | Thale cress | nucleus | 20.08 | 19.71 |
| AT1G19700.3 | Thale cress | nucleus | 21.35 | 18.77 |
| AT1G75410.2 | Thale cress | nucleus | 20.72 | 18.7 |
| Zm00001d002249_P001 | Maize | nucleus | 13.74 | 18.47 |
| AT4G34610.3 | Thale cress | nucleus | 20.08 | 17.86 |
| AT2G27990.1 | Thale cress | nucleus | 20.3 | 16.44 |
| AT2G35940.3 | Thale cress | nucleus | 23.47 | 16.32 |
| AT5G41410.1 | Thale cress | nucleus | 20.93 | 16.2 |
| AT2G23760.4 | Thale cress | nucleus | 20.51 | 14.29 |
| AT5G02030.1 | Thale cress | nucleus | 17.12 | 14.09 |
| AT4G36870.2 | Thale cress | nucleus | 20.08 | 12.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | EntrezGene:829435 | ProteinID:AEE86154.1 | ProteinID:ANM66154.1 | ArrayExpress:AT4G32980 |
| EnsemblPlantsGene:AT4G32980 | RefSeq:AT4G32980 | TAIR:AT4G32980 | RefSeq:AT4G32980-TAIR-G | EnsemblPlants:AT4G32980.1 | TAIR:AT4G32980.1 |
| Symbol:ATH1 | EMBL:AY072174 | EMBL:AY096513 | Unigene:At.76 | ProteinID:CAA21207.1 | ProteinID:CAB05910.1 |
| ProteinID:CAB80015.1 | ProteinID:CAC51426.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006629 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008285 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 |
| GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009838 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010227 |
| GO:GO:0010228 | GO:GO:0010371 | GO:GO:0019748 | GO:GO:0043565 | GO:GO:0090470 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_001328067.1 | RefSeq:NP_195024.1 | UniProt:P48731 |
| PFAM:PF05920 | PFAM:PF07526 | PO:PO:0000013 | PO:PO:0000017 | PO:PO:0000035 | PO:PO:0000036 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020148 | PO:PO:0025022 |
| PO:PO:0025281 | InterPro:POX_dom | PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | SMART:SM00389 |
| SMART:SM00574 | SUPFAM:SSF46689 | UniParc:UPI000000179D | EMBL:X80126 | SEG:seg | : |
Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
Coordinates
chr4:-:15914670..15918153
Molecular Weight (calculated)
53902.7 Da
IEP (calculated)
6.902
GRAVY (calculated)
-0.534
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.