CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG20488
KXG40306
OQU84501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	KXG40306	AT1G62990.1	15781858
AT4G32980.1	KXG20488	AT5G11060.1	15781858
AT4G32980.1	OQU84501	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046223_P006	Maize	nucleus	81.58	82.08
TraesCS7D01G364500.1	Wheat	nucleus	53.44	48.0
TraesCS7A01G358300.1	Wheat	nucleus	53.44	47.74
TraesCS7B01G269400.1	Wheat	nucleus	53.24	47.64
Os06t0562300-00	Rice	nucleus	48.99	44.4
HORVU7Hr1G088090.4	Barley	nucleus	47.98	42.78
CDX75307	Canola	nucleus	18.22	40.54
EES04785	Sorghum	nucleus	42.51	37.23
GSMUA_Achr2P19430_001	Banana	nucleus	28.54	26.06
VIT_04s0008g00880.t01	Wine grape	nucleus	30.97	25.98
GSMUA_AchrUn_...	Banana	nucleus	30.77	25.63
PGSC0003DMT400076995	Potato	nucleus	27.73	25.37
KRH52190	Soybean	nucleus	28.14	25.32
CDX75313	Canola	nucleus	23.68	25.11
KRH05496	Soybean	nucleus	28.95	25.04
Bra037031.1-P	Field mustard	nucleus	22.06	24.94
Bra011403.1-P	Field mustard	nucleus	23.48	24.89
CDX68927	Canola	nucleus	23.08	24.73
AT4G32980.1	Thale cress	nucleus	23.48	24.52
Solyc08g065420.2.1	Tomato	nucleus	27.53	24.33
CDY13511	Canola	nucleus	21.46	24.26
KRH61499	Soybean	nucleus	27.53	23.65
KXG37846	Sorghum	nucleus	17.0	23.6
CDX72383	Canola	nucleus	21.26	23.23
CDX68925	Canola	cytosol	7.49	20.44
EER89055	Sorghum	nucleus	17.0	16.03
EES18336	Sorghum	nucleus	18.02	15.61
EER92806	Sorghum	nucleus	18.62	15.59
EES09309	Sorghum	nucleus	21.66	15.51
KXG24130	Sorghum	nucleus	20.24	15.2
EER91079	Sorghum	nucleus	19.84	15.1
KXG40303	Sorghum	nucleus	18.62	14.7
EER92018	Sorghum	nucleus	18.42	14.35
EES03882	Sorghum	nucleus	17.0	14.17
EER93512	Sorghum	nucleus, plastid	21.05	13.51
CDX68906	Canola	nucleus	6.28	11.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EntrezGene:8076725	UniProt:A0A194YJS1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:KXG20197	ProteinID:KXG20197
ProteinID:KXG20197.1	ProteinID:OQU76580.1	ProteinID:OQU76581.1	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF200	SMART:SM00389	EnsemblPlantsGene:SORBI_3010G169200	SUPFAM:SSF46689
UniParc:UPI0007F21702	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:49920953..49925223

Molecular Weight (calculated)

52610.8 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.276

Length

494 amino acids

Sequence
(BLAST)

001: MTGSNASYQQ QLGLGVGVGV DAMTRNCFVS GDGSDIISAD AAPLFHVPEY TPSSGFGFVG EPAAADIAAS SFPADGSVLL AGHQLLRATA LQSVSPEETT
101: HAGGAYGVTG GGSYSYSYVP SPWDVTVAHA PRMAKQLSIA GEPAEGGWIH ESSYYCPTTW FSGHAQFAGA PASELSLRLR AGSSPTAGAV SASLPDQSSE
201: VSCSGPGLFQ PPCGAGGQVV RQVPMHFSQV LSRWSGYANI AQQALDEFVG CLLQDVAGFA GFTTGGGEAS CPLPSSSCSK TTSSSDPNPS MFLGSEEHNH
301: KLKNDLQKLL QIMDQRCKQC MDEIQSAACK YGSLVRPGGG ALSAPFAHGA VSAMHRRLRA RITGEIAAAT RRGDQPSSSS SLSLTLADRE RSWESAFIQK
401: HWALRQLRRG DQQSWRPQRG LPEKSVAVLK AWMFENFLRP YPKDNEKEML AARSGLSRSQ VSNWFINARV RLWKPMIEEM YEDLKKASGG MEGV

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.