Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75307 | Canola | nucleus | 61.88 | 50.45 |
| CDX68927 | Canola | nucleus | 62.43 | 24.51 |
| CDX75313 | Canola | nucleus | 61.33 | 23.82 |
| CDY13511 | Canola | nucleus | 56.91 | 23.57 |
| CDX72383 | Canola | nucleus | 58.01 | 23.23 |
| AT4G32980.1 | Thale cress | nucleus | 51.93 | 19.87 |
| CDX83753 | Canola | nucleus | 14.92 | 14.21 |
| KRH52190 | Soybean | nucleus | 39.78 | 13.11 |
| KRH61499 | Soybean | nucleus | 41.44 | 13.04 |
| PGSC0003DMT400076995 | Potato | nucleus | 38.67 | 12.96 |
| KRH05496 | Soybean | nucleus | 40.33 | 12.78 |
| Solyc08g065420.2.1 | Tomato | nucleus | 38.67 | 12.52 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 40.33 | 12.39 |
| CDX73171 | Canola | nucleus | 17.13 | 10.73 |
| CDY47523 | Canola | nucleus | 17.13 | 10.73 |
| CDY21826 | Canola | extracellular, plastid | 5.52 | 10.42 |
| CDY29411 | Canola | nucleus | 20.44 | 9.51 |
| CDY45383 | Canola | nucleus | 13.81 | 9.51 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 28.18 | 8.81 |
| CDY02261 | Canola | nucleus | 21.55 | 8.69 |
| CDX89711 | Canola | nucleus | 21.55 | 8.57 |
| CDY63699 | Canola | nucleus | 19.34 | 8.37 |
| CDY46209 | Canola | nucleus | 16.57 | 7.94 |
| CDY30566 | Canola | nucleus | 19.34 | 7.81 |
| CDX77099 | Canola | nucleus | 19.34 | 7.8 |
| Zm00001d046223_P006 | Maize | nucleus | 20.99 | 7.74 |
| CDX71279 | Canola | nucleus | 16.57 | 7.73 |
| Os02t0226600-01 | Rice | nucleus | 22.65 | 7.61 |
| CDX96653 | Canola | nucleus | 20.99 | 7.51 |
| KXG20197 | Sorghum | nucleus | 20.44 | 7.49 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 22.65 | 7.41 |
| Zm00001d016298_P001 | Maize | nucleus | 22.1 | 7.3 |
| Zm00001d002249_P001 | Maize | nucleus | 13.81 | 7.1 |
| EES04785 | Sorghum | nucleus | 22.1 | 7.09 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 21.55 | 7.09 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 21.55 | 7.07 |
| CDY52073 | Canola | nucleus | 18.23 | 7.01 |
| CDX68129 | Canola | nucleus | 18.23 | 6.98 |
| CDY39031 | Canola | nucleus | 18.23 | 6.9 |
| CDX73170 | Canola | nucleus | 19.34 | 6.81 |
| Os06t0562300-00 | Rice | nucleus | 19.89 | 6.61 |
| CDY47524 | Canola | nucleus | 18.78 | 6.59 |
| CDX85896 | Canola | nucleus | 17.68 | 6.36 |
| CDY39359 | Canola | nucleus | 18.23 | 6.36 |
| CDY32069 | Canola | nucleus | 22.1 | 6.29 |
| CDX84585 | Canola | nucleus | 23.2 | 6.26 |
| CDY40420 | Canola | nucleus | 21.55 | 6.17 |
| CDY44476 | Canola | nucleus | 19.34 | 6.16 |
| CDX79646 | Canola | nucleus | 22.65 | 5.93 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 17.68 | 5.78 |
| CDX84171 | Canola | nucleus | 18.23 | 5.61 |
| CDY45321 | Canola | nucleus, plastid | 20.99 | 5.55 |
| CDX75085 | Canola | nucleus | 18.23 | 5.25 |
| CDY46061 | Canola | nucleus | 14.92 | 4.44 |
| CDX76849 | Canola | nucleus | 14.36 | 4.33 |
| CDY39669 | Canola | nucleus | 14.92 | 4.19 |
| CDY62523 | Canola | nucleus | 14.92 | 4.17 |
| CDX69252 | Canola | nucleus | 14.36 | 3.9 |
| CDY24765 | Canola | nucleus | 14.36 | 3.9 |
| CDX75604 | Canola | nucleus | 14.36 | 3.89 |
| CDY22463 | Canola | nucleus | 14.36 | 3.88 |
| CDY69132 | Canola | nucleus | 11.6 | 3.66 |
| CDY10473 | Canola | nucleus | 11.6 | 3.65 |
| CDY40327 | Canola | nucleus | 11.6 | 3.63 |
| CDY48107 | Canola | nucleus | 11.05 | 3.48 |
| CDY55113 | Canola | nucleus | 9.94 | 3.44 |
| CDX80798 | Canola | nucleus | 9.39 | 3.2 |
| CDX68906 | Canola | nucleus | 3.31 | 2.32 |
Protein Annotations
| EnsemblPlants:CDX68925 | EnsemblPlantsGene:GSBRNA2T00130668001 | InterPro:POX_dom | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | PFAM:PF07526 |
| ProteinID:CDX68925 | ProteinID:CDX68925.1 | UniParc:UPI0004EEA0F2 | MapMan:35.1 | : | : |
Description
BnaC01g05280D
Coordinates
chrLK031789:-:2056996..2057990
Molecular Weight (calculated)
20656.3 Da
IEP (calculated)
10.553
GRAVY (calculated)
-0.487
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLISRNRV RGHCVDEIHT VVSAFHAATE LDPQLHTRFA LQTISYLYKN LRERISKKIL MMGSGFRERQ REVSRRLNLP PALPSSAAKT LGSTYMDVPK
101: LSSPLPERFR ETSSCYTKWI DKKSGIKLVY KCAGKPMIED MYAEMNKRKL NNTHLQGGNG GSIIRVPKSV MMSQESDKIR E
101: LSSPLPERFR ETSSCYTKWI DKKSGIKLVY KCAGKPMIED MYAEMNKRKL NNTHLQGGNG GSIIRVPKSV MMSQESDKIR E
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.