Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G62990.1 | Thale cress | nucleus | 89.64 | 68.38 |
| CDY64892 | Canola | nucleus | 90.09 | 68.03 |
| CDY66559 | Canola | nucleus | 89.19 | 67.35 |
| CDY45968 | Canola | nucleus | 88.74 | 67.24 |
| KRH27981 | Soybean | nucleus | 77.03 | 61.29 |
| KRH77464 | Soybean | nucleus | 77.48 | 61.21 |
| VIT_02s0025g04630.t01 | Wine grape | nucleus | 76.58 | 58.42 |
| KRH03996 | Soybean | nucleus | 75.68 | 57.53 |
| KRH57265 | Soybean | nucleus | 75.68 | 57.34 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 74.32 | 56.7 |
| Solyc08g080120.2.1 | Tomato | nucleus | 77.03 | 55.16 |
| PGSC0003DMT400058528 | Potato | nucleus | 77.03 | 54.81 |
| Zm00001d027431_P002 | Maize | nucleus | 72.97 | 52.26 |
| Os03t0123500-02 | Rice | nucleus | 73.42 | 51.91 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 71.62 | 51.13 |
| TraesCS5A01G515000.1 | Wheat | nucleus | 71.62 | 50.96 |
| TraesCS4B01G346100.1 | Wheat | nucleus | 71.62 | 50.96 |
| Zm00001d048471_P001 | Maize | nucleus | 72.97 | 50.94 |
| KXG40306 | Sorghum | nucleus | 73.87 | 50.77 |
| HORVU4Hr1G084680.1 | Barley | nucleus | 71.62 | 50.48 |
| CDX88165 | Canola | nucleus | 64.41 | 47.83 |
| CDY41449 | Canola | nucleus | 22.52 | 41.32 |
| CDX75215 | Canola | nucleus | 61.26 | 36.36 |
| CDX78407 | Canola | nucleus | 63.06 | 36.27 |
| CDX68812 | Canola | nucleus | 60.81 | 36.1 |
| CDX85732 | Canola | nucleus | 63.06 | 35.62 |
| CDY13472 | Canola | nucleus | 61.26 | 35.6 |
| CDY05371 | Canola | nucleus | 64.41 | 35.4 |
| CDY51104 | Canola | nucleus | 62.61 | 35.37 |
| CDX72343 | Canola | nucleus | 61.71 | 34.25 |
| CDY05480 | Canola | nucleus | 64.41 | 34.05 |
| CDX80491 | Canola | nucleus | 64.86 | 32.43 |
| CDY34012 | Canola | nucleus | 24.77 | 28.5 |
| CDY69524 | Canola | nucleus | 23.42 | 25.49 |
| CDY70923 | Canola | nucleus | 23.42 | 25.37 |
| CDX70374 | Canola | nucleus | 33.78 | 24.83 |
| CDX91713 | Canola | nucleus | 27.48 | 19.43 |
| CDY09448 | Canola | nucleus | 27.93 | 18.96 |
| CDY03742 | Canola | nucleus | 27.93 | 18.96 |
| CDX83145 | Canola | nucleus | 27.93 | 15.42 |
| CDY12943 | Canola | nucleus | 26.13 | 15.14 |
| CDY19545 | Canola | nucleus | 26.13 | 15.14 |
| CDY68624 | Canola | nucleus | 18.02 | 11.46 |
| CDY44142 | Canola | nucleus | 6.76 | 6.38 |
| CDY04722 | Canola | nucleus | 5.86 | 5.88 |
| CDY41448 | Canola | nucleus | 4.95 | 5.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078DY66 | EnsemblPlants:CDX93852 | ProteinID:CDX93852 | ProteinID:CDX93852.1 |
| InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00156648001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX2 | PFAM:PF03791 | PFAM:PF05920 |
| PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF74 | SMART:SM00389 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE873D | : | : | : | : |
Description
BnaC04g20110D
Coordinates
chrLK031878:+:25111..27873
Molecular Weight (calculated)
25735.8 Da
IEP (calculated)
8.821
GRAVY (calculated)
-0.724
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFTKIKNIL MYIYVGTNNN KNWIQVQYVM VLCSFKEQLQ QHVRVHAVEA VMACREIENN LHSLTGATLG EGSGATMSED EEDLHMDFSS DTSGVGFSGG
101: HDMTGFGPLL PTESERSLME RVRQELKLEL KQGFKSRIED VREEIMRKRR AGKLPGDTTT VLKNWWQQHC KWPYPTEDDK AKLVEETGLQ LKQINNWFIN
201: QRKRNWHNNS HSLTSLKSKR KH
101: HDMTGFGPLL PTESERSLME RVRQELKLEL KQGFKSRIED VREEIMRKRR AGKLPGDTTT VLKNWWQQHC KWPYPTEDDK AKLVEETGLQ LKQINNWFIN
201: QRKRNWHNNS HSLTSLKSKR KH
001: MQEAALGMMG ATVGGDGDTA VVAEQNRQLK GEIATHPMYE QLLAAHVACL RVATPIDQLP IIEAQLSQSH HLLRSYASTA VGYHHDRHEL DNFLAQYVMV
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
101: LCSFKEQLQQ HVRVHAVEAV MACREIENNL HSLTGATLGE GSGATMSEDE DDLPMDFSSD NSGVDFSGGH DMTGFGPLLP TESERSLMER VRQELKLELK
201: QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H
Arabidopsis Description
KNAT7Homeobox protein knotted-1-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.